Ozgun Gokce @ozgungokce Twitter profile

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Ozgun Gokce

@ozgungokce

2 months

Lucky to work with amazing people in #UKBonn #UniklinikBonn @DZNE_en and attend #FENSForum2024 together

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Ozgun Gokce

@ozgungokce

1 year

I’m happy to share that I started a new position as Professor at University Bonn, UKB. We will continue to harness Big Data & Omics to illuminate the Brain and Body.

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Ozgun Gokce

@ozgungokce

2 years

Proud to share our new method for combined #MERFISH Spatial Transcriptomics correlated Electron Microscopy #STcEM spearheaded by @AndrovicPeter , @KatrinPAnderson and Martina Schifferer. Spatial Transcriptomics-correlated Electron Microscopy

Spatial Transcriptomics-correlated Electron Microscopy

Current spatial transcriptomics methods identify cell states in a spatial context but lack morphological information. Scanning electron microscopy, in contrast, provides structural details at...

www.biorxiv.org

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Ozgun Gokce

@ozgungokce

8 months

@DaniBeckman People born spanish influenza times had almost triple risk of getting Parkinson compared to those born before 1888 or after 1924. This hints that having the flu early in life might increase PD risk. We will see how covid-19 plays out....

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Ozgun Gokce

@ozgungokce

2 years

Our group is moving to the University of Bonn @UniBonn and @DZNE_en . We are sad to say goodbye to our home for last 5 years @ISD_Research . I am filled with gratitude for the fun collaborations and the alps. To those around Bonn region, I’d love to connect!

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Ozgun Gokce

@ozgungokce

8 months

Come to Bonn for your Ph.D.! Your parents are always welcome!

Rishi Sunak

@RishiSunak

8 months

From today, the majority of foreign university students cannot bring family members to the UK. In 2024, we’re already delivering for the British people.

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Ozgun Gokce

@ozgungokce

1 year

I'm thrilled to share our study @NatureComms ! Combining #MERFISH , Electron Microscopy #EM , and #scRNA -seq, we explored intricate brain injury responses and resolved #Microglia . Massive shout-out to @AndrovicPeter and @MaSchifferer . Stay tuned for more!

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Ozgun Gokce

@ozgungokce

2 years

Are you interested to join The Gokce lab and the Simons lab to develop new strategies for the prevention of aging and neurodegenerative diseases? We have Postdoc, Ph.D. student and technician positions available immediately! Details below. RTs appreciated!

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Ozgun Gokce

@ozgungokce

4 years

Bogazici mezunu Türkiye'nin ilk kadın doktoru Dr. Safiye Ali bugun Google Kapagi oldu! #A şağıBakmayacağız

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Ozgun Gokce

@ozgungokce

4 years

So happy! Our collaborative publication with Simons lab: white matter aging drives microglial diversity. Here goes first manuscript twitter-thread strom :)

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Ozgun Gokce

@ozgungokce

2 years

Please RT: We have 1 postdoctoral fellow and 1 PhD position opening! We study brain and immune system interactions using spatial and scRNA-seq. #SpatialGenomics #BiologicalSciences #sciencejobs #postdocjobs #phdjobs #researchjobs #HCA #CZI .

Postdoctoral research fellow (f/m/d)

Post a job in 3min, or find thousands of job offers like this one at jobRxiv!

jobrxiv.org

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Ozgun Gokce

@ozgungokce

2 years

Super excited to share our collaborative work with Mikael Simons lab which is led by @tugberkkaya_ , @LuLiu_Laura , Nico (twitterless).

Nature Neuroscience

@NatureNeuro

2 years

Single-cell profiling of aging mouse white matter reveals a population of interferon (IFN)-responsive #oligodendrocytes , which localize in proximity to CD8+ T cells New from @ozgungokce Mikael Simons and colleagues

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Ozgun Gokce

@ozgungokce

3 years

Our work with Mika Simons Lab, " White matter aging drives microglial diversity" is on the @NeuroCellPress cover. The cover is an illustration of the myelin whorls. So much fun to put this cover together with amazing @garipay !

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Ozgun Gokce

@ozgungokce

2 years

Join our group! we have open positions for #phdstudents , #postdocs , and #researchassociates to study the fundamental biology of neurodegenerative disorders using advanced techniques like #SingleCellGenomics , #MachineLearning . DM me for more info #phdjob #postdocjob pls RT

Ozgun Gokce

@ozgungokce

2 years

Our group is moving to the University of Bonn @UniBonn and @DZNE_en . We are sad to say goodbye to our home for last 5 years @ISD_Research . I am filled with gratitude for the fun collaborations and the alps. To those around Bonn region, I’d love to connect!

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Ozgun Gokce

@ozgungokce

2 years

Not attending #sfn22 ? Why not visually explore adaptive immune system's impact on aged #oligodendrocye and #microglia #SingleCell datasets? Our data from is now on @cziscience ’s #CZCELLxGENE :

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Ozgun Gokce

@ozgungokce

1 year

Received a gorgeous goodbye gift from @ISD_Research . I'm excited about joining @UniBonn & @DZNE_en and the opportunities it brings, but I'll also miss the amazing friends and colleagues at Munich. I want to thank everyone for their support and collaboration in the past 5 years!

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Ozgun Gokce

@ozgungokce

1 year

Thank you, @vizgen_inc ! The final version is just out and exceptionally impressive! Kudos to @AndrovicPeter for leading the amazing job, and our electron microscopy guru @MaSchifferer . 🔥 Make sure to check out the final version here:

Vizgen

@vizgen_inc

1 year

@ozgungokce 's lab developed Spatial Transcriptomics-correlated Electron Microscopy ( #STcEM ) using #MERFISH data generated by the Vizgen #LabServices team with #MERSCOPE . Learn more: 🐭🧠 #SpatialTranscriptomics #Neuroscience #MouseBrain #AcademicTwitter

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Ozgun Gokce

@ozgungokce

1 year

First project completed for my office @DZNE_en Bonn…

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Ozgun Gokce

@ozgungokce

11 months

Dr. Simon Besson-Girard stands distinct, the first PhD beacon from Gokce Lab. My gratitude for your artful bioinformatics and genomics alchemy. Your works already echo far and wide!

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Ozgun Gokce

@ozgungokce

2 years

Gokcelab celebrate Karneval 🎉 at Munich… trying to get ready for the Bonn move!

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Ozgun Gokce

@ozgungokce

3 years

Looking forward to share our work on brain aging using #scRNAseq and #spatialtranscriptomics with Turkish bioinformatics students! #bioinfocongress bulusmak uzere 😊

BIOINFORANGE

@bioinforange

3 years

18-20 Mart 2022 tarihlerinde online olarak gerçekleştireceğimiz #BIOINFOCONGRESS II organizasyonumuzun ilk afişini sizlere heyecan ile sunuyoruz. Katılım ücretsizdir ve kayıt için başvurularımız başlamıştır. Tüm bilimseverleri davet ediyoruz. Kayıt için:

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Ozgun Gokce

@ozgungokce

2 years

Proud to share the second part results of our partnership between Simons and Gokce Labs on brain aging. Imagine, we postpone the effects of brain aging – it’s a possibility. Check out @tugberkkaya , Nicola Mattugini, and @LuLiu_Laura ’s work #thread

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Ozgun Gokce

@ozgungokce

2 years

Check out the latest Nature Immunology: Views where @LabListon and Lidia Yshii discuss our recent work and highlight the links of a physiological role for interferon during development! Thank you! News & views: Article:

This link will take you to a page that’s not on LinkedIn

lnkd.in

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Ozgun Gokce

@ozgungokce

1 year

Excited to attend @ChanZuckerberg 's #NDChallengeNetwork annual meeting in San Diego! I'll be showcasing our innovative research on how the correlation of Merfish and electron microscopy enhances our understanding of rare immune responses in neurodegeneration.

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Ozgun Gokce

@ozgungokce

1 year

Utilizing both electron microscopy and MERFISH, we're nearing Feynman's dream of a more efficient EM! Take a look at our research on brain injuries below 🔥 please RT!

Peter Androvič

@AndrovicPeter

1 year

Is ultrastructure of the cell mirrored by its transcriptional state? What is the relationship between molecular and structural phenotypes? How do they localize in the tissue and reorganize after brain injury? A thread on our new study…🧵

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Ozgun Gokce

@ozgungokce

2 years

Very cool! The complete cell atlas of an aging multicellular organism

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Ozgun Gokce

@ozgungokce

2 years

What a venue! Human Cell Atlas (HCA) meeting starting #HCA2022GM @cziscience @humancellatlas

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Ozgun Gokce

@ozgungokce

11 months

After Munich #Merscope @vizgen_inc landed again to our lab @UniklinikBonn and @DZNE_en . Thank you for your support @ImmunoSens ! The more you do something, the better you get at it, right?

Vizgen

@vizgen_inc

2 years

The MERSCOPE Platform has landed at @LMU_Muenchen in Germany! Happy MERfishing to @ozgungokce and team! Big thanks to @steven_harbert , Miles and Andrew for another successful install! #spatialgenomics #MERFISH

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Ozgun Gokce

@ozgungokce

2 years

One and only @fabian_theis sharing ideas 💡 on how to generate an interpretable #humancellatlas using label transfer and machine learning at #HCA2022GM . @HelmholtzMunich @TU_Muenchen @humancellatlas

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Ozgun Gokce

@ozgungokce

2 years

@TheBcellArtist Compare to my period 2009, now very few wants to go US for postdoc. One reason is many labs in Europe and China are competitive. a US postdoc is no longer a must. Other is a possible second term of Trump...

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Ozgun Gokce

@ozgungokce

4 years

Please RT | We are looking for a computational postdoctoral or a Ph.D. student with prior coding experience in Python or R. Project is part of Chan Zuckerberg’s Neurodegeneration Challenge Network.

News / Open Positions — gokce

www.gokcelab.com

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Ozgun Gokce

@ozgungokce

8 months

Charting a New Course Through the Injured Brain. Many thanks to @RashmiShivni for the fantastic article covering our latest publication!

Charting a New Course Through the Injured Brain

A state-of-the-art technique helps scientists map out tissue at the single cell level after a demyelinating brain injury.

www.the-scientist.com

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Ozgun Gokce

@ozgungokce

3 years

Please RT 📣 JOB ALERT. We are looking for PhD students to join and decipher mechanistic links between immune cells and brain aging. Contact me if interested via e-mail or DM.

PhD studentships in analysis of aging brain (f/m/d)

Post a job in 3min, or find thousands of job offers like this one at jobRxiv!

jobrxiv.org

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Ozgun Gokce

@ozgungokce

4 years

@FyfeEmily My wise wife altered the etimology of word "MOM!" when our son started saying it. Now, "MOM!" means: nearest adult who is capable to help.

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Ozgun Gokce

@ozgungokce

3 years

Tonight introducing my group's research @TazebayUygar in Turkish (a first for me). Bu akşam TR saati ile 21:00'de @TazebayUygar ile Labimizdaki çalışmalar üzerine konuşacağız.

Uygar Tazebay

@TazebayUygar

3 years

Perşembe akşamı saat 21:00'de Çekirdek Konuşmaları değerli Özgün Gökçe'yi (Münih, Almanya) konuk ediyor. Sevgili Gökçe ile bağışıklık ve sinir sistemleri arasındaki ilginç hücresel ve moleküler etkileşimleri konuşacağız. Sakın kaçırmayın! YouTube canlı:

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Ozgun Gokce

@ozgungokce

2 years

Ben teşekkür ederim! Cok güzel sorular geldi.

BIOINFORANGE

@bioinforange

2 years

@ozgungokce Sayın Dr. Özgün Gökçe ( @ozgungokce ) hocamıza davetimizi kabul ederek bilgilendirici konuşması ve bizimle gerçekleştirdiği keyifli etkinlik için teşekkür ederiz. #bilimlekalal ım

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Ozgun Gokce

@ozgungokce

4 years

Honored and excited to join @ChanZuckerberg ’s Neurodegeneration Challenge Network with Mika Simons to study Role of White Matter and Cerebrovascular Aging in Neurodegeneration @DZNE @cziscience @ISD_Research

CZI Science

@cziscience

4 years

We’re welcoming 60 new grantees to @ChanZuckerberg ’s Neurodegeneration Challenge Network! These researchers are piloting innovative approaches to fighting neurodegenerative diseases like #Alzheimers , #Parkinsons + #ALS

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Ozgun Gokce

@ozgungokce

9 months

The Temporal Waltz of Single-Cell Trajectories

Buitengebieden

@buitengebieden

9 months

Murmuration of starlings in Italy.. 😊

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Ozgun Gokce

@ozgungokce

1 year

Feel very privileged and proud to be part of this network! Thanks @cziscience and #NDChallengeNetwork for building such a scientific culture created together with patients and trainees!

CZI Science

@cziscience

1 year

Thanks to all who joined the #NDChallengeNetwork meeting! It was great to connect & hear from @singletonneuro + @nachogenePD about the Global Parkinson’s Genetics Program & its goal to increase diversity in Parkinson’s disease research.

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Ozgun Gokce

@ozgungokce

2 years

Looking forward to present our new method: combined #MERFISH Spatial Transcriptomics correlated Electron Microscopy #STcEM #neuroscience #spatialomics #spatialbiology #Latsis

LashuelNeuroLab

@LashuelLab

2 years

One week to go before the #Latsis / Sinergia Symposium 2022 🧠 Stellar line up of speakers, early career researchers, and amazing posters! @EPFL @epflSV @Brainmind_EPFL

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Ozgun Gokce

@ozgungokce

2 years

Awesome study

Ali Max Erturk

@erturklab

2 years

Imagine you could stain whole adult mice with standard IgG antibodies. What you couldn't do! We present wildDISCO technology for this🤗, creating the first whole body vascular, lymphatic, and nerve atlases. By @HongchengM @jieluo692 🧵👇🏼(turn on the sound)

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Ozgun Gokce

@ozgungokce

1 year

Proud of our PhD student @tugberkkaya_ who skilfully analyzed aging brain cells and revealed role of cd8 T cells driving brain aging!

Open Box Science

@OpenBoxSci

1 year

OBS #Neuroimmunology Seminar 📅 Thursday, April 13, 12 pm ET/6 pm CET 🗣️ SPEAKER HIGHLIGHT Tuğberk Kaya @ozgungokce @TU_Muenchen @DZNE_en 👉 Registration: #openscience #whitematter

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Ozgun Gokce

@ozgungokce

2 years

Looking forward to share our work!

MaCSBio

@MaCSBio

2 years

@MaastrichtU @MaCSBio Lecture Series Come listen to our next speaker @ozgungokce on 5 July at 3 pm. Register here for receiving the zoom link. #neurosciences #ageing #seminar

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Ozgun Gokce

@ozgungokce

7 months

Marking International Day of Women & Girls in Science, I took an implicit bias test: My results showed a slight bias associating men with career & women with family. Let's all strive for improvement starting from ourselves. #WomenInScience

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Ozgun Gokce

@ozgungokce

3 years

In these dark hours, our thoughts are with the innocent women, men and children of Ukraine 🇺🇦

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Ozgun Gokce

@ozgungokce

11 months

Always on the lookout for team players eager to navigate at the intersection of wetlab & drylab. Join us in exploring ways to maintain a longer, healthier mind and body!

Rheinische Friedrich-Wilhelms-Universität Bonn

@UniBonn

11 months

The #UniversityofBonn is among the top 100 universities in the world. This is the result of the internationally renowned #THEranking of the UK-based magazine “Times Higher Education”. ➡ Read more:

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Ozgun Gokce

@ozgungokce

4 years

Such a resource to guide our aging projects! Amazing data quality, Tabula Muris Senis, 1st single-cell aging cell atlas. Many kudos to @spyros_darmanis , @shayanhoss , @drAOPisco , @wysscoray , @czbiohub , @nature , #Aging , #singlecell , #computationalbiology ,

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Ozgun Gokce

@ozgungokce

2 years

Very proud of being part of this team! Our results suggest we can prevent brain aging!

Lu Liu

@LuLiu_Laura

2 years

I am excited to share our collaboration with @tugberkkaya_ , Nico (twitterless), supervised by @ozgungokce , and Mikael Simons. Our study identified age-related interferon-responsive oligodendrocytes induced by CD8+ T cells in white matter.

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Ozgun Gokce

@ozgungokce

3 years

As Boğaziçi University alumni, I am proud of the students and teachers who peacefully protested for academic freedom and the university’s independence. A key moment for defending the Turkey's future: the appointed rector is removed! #TurkiyeKazandi #BogaziciKazandi

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Ozgun Gokce

@ozgungokce

2 years

Positions will aim to translate our findings I will present tomorrow. Join my talk:

Ozgun Gokce

@ozgungokce

2 years

Are you interested to join The Gokce lab and the Simons lab to develop new strategies for the prevention of aging and neurodegenerative diseases? We have Postdoc, Ph.D. student and technician positions available immediately! Details below. RTs appreciated!

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Ozgun Gokce

@ozgungokce

2 years

Emotional to be back at my PhD institute EPFL as a PI to share my group’s work in #Latsis Symposium! Many thanks to @Hlashuel for invitation and organization! Program: …… Zoom Registration …

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Ozgun Gokce

@ozgungokce

9 months

Bir @UniBogazici mezunu olarak Bonn Üniversitesinde profesörüm. Ama akedemik ünvan insanı insan yapmıyor valla. Pek ciddiye almayın ben surda burda Prof'um diyenleri. 2024'de güney kampusde özgürce tavla atma ümidiyle!

Tamer Kahveci - تامر قهوجي

@tamer_kahveci6

9 months

Sevgili @UniBogazici li genc ogrenciler Florida Uni’de profesörüm. Yani, mezun olunca gelmek isteyeceğiniz yerlere siz doğmadan önce geldim Sizi bu saçma sapan eylemlere yönlendiren ve gaz veren tuhaf tipleri kaale almayin. Kandiriliyorsunuz. Aptal yerine konuyorsunuz

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Ozgun Gokce

@ozgungokce

2 years

Please RT. We made a surprising finding that CD8 T cells drive brain aging. Now, we are looking for computational colleagues to understand this further:

Computational PhD and Postdoc positions on genomics

Post a job in 3min, or find thousands of job offers like this one at jobRxiv!

jobrxiv.org

Nature Neuroscience

@NatureNeuro

2 years

Single-cell profiling of aging mouse white matter reveals a population of interferon (IFN)-responsive #oligodendrocytes , which localize in proximity to CD8+ T cells New from @ozgungokce Mikael Simons and colleagues

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Ozgun Gokce

@ozgungokce

1 year

looking forward to share our work with MERSCOPE! 🎣

Vizgen

@vizgen_inc

1 year

📣 #SpatialBiology Online #WebinarSeries hosted by @FLGenomics starts today at 10 am EDT! Learn about #SpatialTechnologies from top industry leaders & researchers including @JiangHe_PhD & @ozgungokce . Register now👉 #MERFISH #MERSCOPE #SpatialGenomics

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Ozgun Gokce

@ozgungokce

1 year

Democracy or dictatorship: that’s what is at stake in this election. Go vote

euronews

@euronews

1 year

Istanbul Mayor and opposition's VP candidate @ekrem_imamoglu 's campaign bus was attacked with stones during a rally in the eastern province of Erzurum

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Ozgun Gokce

@ozgungokce

1 year

See how Can Yang, Angela Wu @thegellybear and et al. are revolutionizing the field of spatial transcriptomics with SpatialScope. A new approach to integrating scRNA-seq and ST data. #SpatialScope #scRNAseq #STdata

SpatialScope: A unified approach for integrating spatial and single-cell transcriptomics data using...

The rapid emergence of spatial transcriptomics (ST) technologies are revolutionizing our under-standing of tissue spatial architecture and their biology. Current ST technologies based on either next...

www.biorxiv.org

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Ozgun Gokce

@ozgungokce

4 years

Can a new Furin cleavage site in #SARSCoV2 spike lead to COVID19 pandemic? Our team lead by Mikael Simons @DZNE_de identified neuropilin-1 ( #NRP1 ) as furin dependent novel #SARSCoV2 receptor. @ISD_Research #Thread

Neuropilin-1 facilitates SARS-CoV-2 cell entry and provides a possible pathway into the central...

The causative agent of the current pandemic and coronavirus disease 2019 (COVID-19) is the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)[1][1]. Understanding how SARS-CoV-2 enters and...

www.biorxiv.org

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Ozgun Gokce

@ozgungokce

9 months

Super cool method Open-ST: cost-effective 3D reconstruction of tissue🌟🔬

Nikolaus Rajewsky

@N_Rajewsky

9 months

here it is- read about 3D virtual tissue blocks, metastasis-lymph node boundaries and unlocking molecular mechanisms in 3D. biggest congratz to the entire team. Open-ST: High-resolution spatial transcriptomics in 3D | bioRxiv

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Ozgun Gokce

@ozgungokce

2 years

Start learning bioinformatics as early as possible! Language barriers are not an issue!! thanks to @bioinforange , @melikedonertas , @RSGTurkey

Melike Dönertaş

@melikedonertas

2 years

Finally had the time to compile at least some of the workshop/course materials together: @RSGTurkey events - Scientific figure design, Introduction to ggplot2 @bioinforange event - Introduction to R (in Turkish) Short lecture - Introduction to tidyverse

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Ozgun Gokce

@ozgungokce

2 years

Do you want to join our team as PhD student? Please RT! #neuroscience #MERFISH #spatialomics #spatialbiology

Join our team as a PhD student for computational analysis of spatial transcriptomics (f/m/d)

Post a job in 3min, or find thousands of job offers like this one at jobRxiv!

jobrxiv.org

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Ozgun Gokce

@ozgungokce

2 years

Imaging-based spatial transcriptomics methods such as #MERFISH are amazing with their ability to detect individual transcripts within the cell. Unfortunately, tissue ultrastructure is destroyed in the process.

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Ozgun Gokce

@ozgungokce

4 years

Hoping traveling will be safe in September for #EBBS2021 Lausanne. I will be chairing Single-cell omics meets behavior symposia with amazing Gul Dolen, @pinarayata and @MathysHansruedi @EBBS_Science

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Ozgun Gokce

@ozgungokce

1 year

The achievements of my lab are done by who have chosen to work in my lab! I'm grateful for your contributions and hope that I've been able to support your success as much as you've supported mine!

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Ozgun Gokce

@ozgungokce

3 years

UEFA bans Allianz Arena in Munich from being lit up in rainbow at Germany vs Hungary match tomorrow. Let's make all Munich lit up like rainbow! but really colourful! #LGBTQRights are human rights #MuenchenMachEsTrotzdem #loveislove #pride #Pride2021

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Ozgun Gokce

@ozgungokce

1 year

Check out this elegant study demonstrating how microglia shape myelination during development! #neuroscience #microglia #myelination

JCellBiol

@JCellBiol

2 years

#Myelination generates aberrant ultrastructure that is resolved by #microglia , say Minou Djannatian, Mikael Simons @TU_Muenchen and colleagues #Neuroscience #Membrane #lipid #zebrafish

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Ozgun Gokce

@ozgungokce

2 years

Thank you for the invitation and amazing organisation! Great to be back at my PhD Institute @EPFL !

LashuelNeuroLab

@LashuelLab

2 years

Ozgun Gokce, LMU University Hospital, Germany Spatial Transcriptomics-correlated Electron Microscopy maps morphological and transcriptional responses to #brain #injury Join the session: #Latsis @EPFL @Hlashuel #neuroscience

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Ozgun Gokce

@ozgungokce

3 years

Our @STARProtocols is now live! This is @LuLiu_Laura 's first author paper from our group. She optimised almost every step of our #scRNASeq preparation and put together a step-by-step protocol for artifact free results. Also, today is her birthday, Happy Birthday @LuLiu_Laura !

Lu Liu

@LuLiu_Laura

3 years

Our @STARProtocols paper is out. If you want to perform droplet or plate-based scRNA-seq experiments with microglia, and all the tips that @LuLiu_Laura and GokceLab @ozgungokce optimized to prevent dissociation artifacts, please don’t miss our paper.

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Ozgun Gokce

@ozgungokce

7 months

Can't wait to share our group's insights!

Sarah Marzi

@sj_marzi

7 months

I'm thrilled to host @ozgungokce from @DZNE_en for our #neurogenomics seminars next Tuesday, 3pm UK time. Join us to hear about his exciting work highlighting the role of T cells in ageing 🧠🧬

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Ozgun Gokce

@ozgungokce

2 years

Integration of cellular states in spatial context for Human cell atlas. Amazing work and talk by @nir_yosef1 ! #HCA2022GM @cziscience @humancellatlas

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Ozgun Gokce

@ozgungokce

2 years

@TreutleinLab ’s PANDO in #HCA2022GM , a flexible linear model-based framework that incorporates multi-omic data to plot the prettiest global gene regulatory networks describing organoid development @humancellatlas

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Ozgun Gokce

@ozgungokce

4 years

We are very happy to contribute to this international effort!

Eric Topol

@EricTopol

4 years

Just published @ScienceMagazine We've known #SARSCoV2 unique feature is cleavage of its muring polybasic site, but it's neuropilin (NRP1) binding that is key factor for its infectivity, a new potential target

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Ozgun Gokce

@ozgungokce

2 years

Why do we have to traumatize animals with fireworks? They don’t give a F to new year…

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Ozgun Gokce

@ozgungokce

2 years

Grateful for the elegantly written preview of our recent study by @NatureAging

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Ozgun Gokce

@ozgungokce

2 years

#BIOINFOCONGRESS ve #Bioinforange ’e güzel organizasyon için çok teşekkür ederim. Tek hücre ve alansal genomik yöntemlerle bunama ve yaşlılık üzerine yaptığımız çalışmaları Bioinformatik öğrencileri ile paylaşmaktan çok mutlu oldum.

BIOINFORANGE

@bioinforange

2 years

#BIOINFOCONGRESS II kapsamında 19 Mart 2022 tarihinde gerçekleştirilen etkinlikte Sayın Dr. Özgün Gökçe ( @ozgungokce ) hocamızın Functional Genomics of Neuroinflammation in Aging and Neurodegeneration konulu konuşmasının videosu paylaşılmıştır. Link:

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Ozgun Gokce

@ozgungokce

2 years

@pdhsu Double Nobel Laureate Frederick Sanger only had 10 PhD students from which Elizabeth Blackburn and Rodney Porter also received Nobel prize. I don't know anyone with 20% of their PhD students end up Nobel Laureate... impressive

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Ozgun Gokce

@ozgungokce

2 years

We are excited to host Prof. Li Gan @LiGanLab for our first hybrid seminar!Her talk titled "Proteostasis, Innate Immunity and Cognitive Resilience in Tauopathy" @SyNergy_Cluster @DZNE_en #TRR274 @ISD_Research

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Ozgun Gokce

@ozgungokce

1 year

Joint Statement from German Postdoctoral Networks on proposed new law

Joint Statement from German Postdoctoral Networks on the Eckpunktepapier from the BMBF on 17.03.2023

www.postdocnet.mpg.de

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Ozgun Gokce

@ozgungokce

1 year

Such inspirational meeting with legends like @AdrianoAguzzi !

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Ozgun Gokce

@ozgungokce

2 years

So proud! Our rising star🌟Ph.D. student @KatrinPAnderson awarded Daiichi Sankyo-Master-Preis for her master thesis in our group! Many exciting findings ahead! 🥳

Abschlussfeier in München: »Sie haben es geschafft«

Bei der akademischen Abschlussfeier des Departments für Pharmazie der LMU München erhielten rund 160 Absolventinnen und Absolventen des Bachelor-...

www.pharmazeutische-zeitung.de

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Ozgun Gokce

@ozgungokce

5 years

Finally! In our new @NeuroCellPress manuscript, amazing @TheRealGStanley developed computational method that distinguished discrete versus continuous heterogeneity in scRNA-seq data. thread Continuous and Discrete Neuron Types of the Adult Murine Striatum

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Ozgun Gokce

@ozgungokce

8 months

@BreakingWave411 @DaniBeckman Brain health is challenged by many illnesses, but what will be COVID's impact on dementia? Is it similar to the flu which is not small, or a deeper threat? How does vaccination change the game? Keeps me awake at night...

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Ozgun Gokce

@ozgungokce

2 years

This is a collaborative work between my group and Mikael Simons lab... using @vizgen_inc technology… more in the paper.. We are grateful to support of @cziscience @SyNergy_Cluster @ISD_Research @DZNE_de

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Ozgun Gokce

@ozgungokce

2 years

Arrived Vienna for Human Cell Atlas (HCA) meeting! Very excited for the science and catching up with friends #HCA2022GM @cziscience

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Ozgun Gokce

@ozgungokce

2 years

Stimulating and fun visit from Bram Heijs @Imagine_Imaging ! Exciting opportunities in combining MSI-based in situ imaging with spatial and single cell genomics. Thanks for #Rockon visit!

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Ozgun Gokce

@ozgungokce

1 year

Who is your Twitter twin?👯Can't deny the striking resemblance🤣! Just a minor detail of @fabian_theis having 43K extra citations, crafting hundreds of genomics tools, and casually bagging many awards. @ozgungokce = @fabian_theis #twitterTwin #toasteed

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Ozgun Gokce

@ozgungokce

2 years

Also If you are Ukrainian PhD student or Postdoc working on genomics and try to finish your project contact me. #Ukraine #Bioinformatics

Ozgun Gokce

@ozgungokce

3 years

Please RT 📣 JOB ALERT. We are looking for PhD students to join and decipher mechanistic links between immune cells and brain aging. Contact me if interested via e-mail or DM.

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Ozgun Gokce

@ozgungokce

2 years

#STcEM then allowed us to directly match transcriptional states to the morphological categories defined from EM images, revealing transcriptional signature of foamy microglia and morphology of interferon-microglia.

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Ozgun Gokce

@ozgungokce

3 years

Nice example why we don't use t-SNE and UMAP as distance preserving tools to interpret data. We use them to give overview of the dataset generated and highlight subpopulations further dive in. Problem is misuse of the tool not the tool.

Lior Pachter

@lpachter

3 years

It's time to stop making t-SNE & UMAP plots. In a new preprint w/ Tara Chari we show that while they display some correlation with the underlying high-dimension data, they don't preserve local or global structure & are misleading. They're also arbitrary.🧵

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Ozgun Gokce

@ozgungokce

2 years

@mike_feigin Nervous system: hold my beer

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Ozgun Gokce

@ozgungokce

1 year

Adaptive immune system taking center stage in neurodegeneration. Specifically, CD4 T cells initiate Parkinson's disease from the gut! Check it out

Francesca Garretti

@FGarrettiPhD

1 year

It is with great joy that I share our manuscript, out today in @NeuroCellPress 🎊 Thank you to my co-author @ConnorMonahan8 and PhD mentors @DAgalliu @david_sulzer 🧠 Interaction of an α-synuclein epitope with HLA-DRB1∗15:01 triggers ent...

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Ozgun Gokce

@ozgungokce

3 years

Fantastic talks at the Sabri Ülker Symposium on Metabolism and Life 2021! #MetabolismandLife2021 many congrats to @ghotamis for organising. My favorite talk from my classmate @nilyapici on neural basis of food intake from fly to mice to human! amazing work!

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Ozgun Gokce

@ozgungokce

1 year

Your papers, blog, and Twitter have played a crucial role in shaping my scientific path, and I am thankful. Pls ignore attention-seeker victimizers...

Arjun Raj

@arjunrajlab

1 year

Remind me again why I do this? (Done ~100 in the past 7-8 months with people at all stages from around the world.) Oh yeah, because it turns out that I actually really like helping people :). Anyway, if anyone is still left to take me up on it, the offer still stands…

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Ozgun Gokce

@ozgungokce

8 months

@DaniBeckman @BreakingWave411 Neurodegeneration is hard to diagnose and takes decades to develop which makes studying links to COVID very hard! also

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Ozgun Gokce

@ozgungokce

2 years

🎣 Thank you @vizgen_inc !! 😁

Vizgen

@vizgen_inc

2 years

The MERSCOPE Platform has landed at @LMU_Muenchen in Germany! Happy MERfishing to @ozgungokce and team! Big thanks to @steven_harbert , Miles and Andrew for another successful install! #spatialgenomics #MERFISH

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Ozgun Gokce

@ozgungokce

5 years

"What do you say to male academics who don't support women in science?" "I don't speak to them." Paul Greengard. Sad day for science...

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Ozgun Gokce

@ozgungokce

9 months

Sobering view at Athens: The Antikythera Mechanism, the world’s first computer, was made 2200 years ago. Yet, no similar advanced device emerged for the next 2 millennia. History shows we’ve often slid back – hoping we’ve learned Smt…🕊️

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Ozgun Gokce

@ozgungokce

2 years

Thank you @NurMustafaoglu for a wonderful visit to @fenssabanci meeting with amazing scientists meltem elitas, cavit agca @hacicavcav , Ogün Adebali @compGenomics , @onurvarol and outstanding students.

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Ozgun Gokce

@ozgungokce

2 years

Big congrats to Xiaowei Zhuang and thanks for the FISH!!!

Breakthrough

@brkthroughprize

2 years

#HBD Xiaowei Zhuang, Breakthrough Prize laureate who has helped create technologies like STORM & MERFISH that push past the diffraction limit of light to reveal images of proteins and other molecular actors in the cell. Learn more: Photo Brigitte Lacombe

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Ozgun Gokce

@ozgungokce

2 years

We then used #MERFISH data to characterize transcriptional cell states responding to white-matter injury, including lipid-associated #microglia and interferon-response microglia.

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Ozgun Gokce

@ozgungokce

4 years

If you need a solid example for contributions of immigrants please use this one: #Turkish #immigrantscientist couple founded BioNTech, whose value is more than four times of Lufthansa and also developed a #COVID19Vaccine !

BioNTech's Covid vaccine: a shot in the arm for Germany's Turkish community

Couple who set up and run firm are children of long-maligned ‘guest workers’ from Turkey

www.theguardian.com

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Ozgun Gokce

@ozgungokce

3 years

Single cell trajectories are awesome!

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