Ying Ma @yingma0107 Twitter profile | Pikagi

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Ying Ma

@yingma0107

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Statistical genetics and genomics. Assistant Professor at Brown Biostats @BrownBiostats and Brown CCMB @BrownCCMB

Providence, RI

https://t.co/2O09dLrNO7

Joined July 2019

Don't wanna be here? Send us removal request.

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@yingma0107

Ying Ma

4 months

🎉 Thrilled to share our latest method, IRIS, now published in @naturemethods ！IRIS is a robust statistical and computational method designed to decode the spatial organization of tissues. It efficiently detects biologically interpretable spatial domains across multi-samples.

@naturemethods

Nature Methods

4 months

Integrative and reference-informed tissue segmentation (IRIS) from Ying Ma & Xiang Zhou harnesses scRNA-seq data for the accurate identification of spatial domains in spatially resolved transcriptomics. IRIS is uniquely suited for analyzing large datasets.

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@yingma0107

Ying Ma

6 months

I am honored to receive the pilot award and grateful for the opportunity to advance our research!

@BrownBiostats

Brown Biostatistics

6 months

Congratulations to Ying Ma, Ph.D., Assistant Professor of Biostatistics, for receiving the American Cancer Society Institutional Research Grant Pilot award! @Brown_SPH | 🔗

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@yingma0107

Ying Ma

2 years

Check out our recent work CARD, a computational fast and memory efficient statistical tool to (1) perform spatially informed cell type deconvolution with or without single cell RNAseq (scRNA-seq) reference

@NatureBiotech

Nature Biotechnology

2 years

Spatially informed cell-type deconvolution for spatial transcriptomics

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@yingma0107

Ying Ma

1 year

🎉 Thrilled to announce my new role at @BrownBiostats and @BrownCCMB ! 🌟 It's been an incredible first week, meeting wonderful, dedicated, and brilliant people driving impactful work in the community. 🙌 Excited for the boundless opportunities ahead at Brown. 📚

@BrownBiostats

Brown Biostatistics

1 year

We are pleased to welcome our new Assistant Professor of Biostatistics Ying Ma, PhD to @BrownUniversity @Brown_SPH Department of Biostatistics. Welcome Ying! ( @yingma0107 )

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@yingma0107

Ying Ma

9 months

Big Congratulations, Dr. Gao @cgao90 🎉🎊🎈🍾

@LabWelch

Josh Welch

9 months

Very proud of my student Chao Gao @cgao90 who successfully defended his dissertation today! Chao did outstanding work and will join AbbVie as a senior scientist in computational biology after graduation.

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@yingma0107

Ying Ma

8 months

Big Congratulations to @xiangzhoulab and @LabWelch and all the outstanding scientists!

@UMichResearch

Michigan Research

9 months

The @UMich ’s Biosciences Initiative has selected five accomplished scientists as the 2024 recipients of the Mid-career Biosciences Faculty Achievement Recognition Award.

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@yingma0107

Ying Ma

2 years

Our work on Exposure Polygenic Risk Scores (ExPRS) is now online @AJHGNews . We share all ExPRS constructs and results via an online interactive repository here:

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@yingma0107

Ying Ma

2 years

Check our group’s new paper discussing the zero inflation problems in spatial transcriptomics！A comprehensive analysis on 20 spatial transcriptomics data sets across 11 different technologies performed by Peiyao Zhao!

@GenomeBiology

Genome Biology

2 years

Zhao, @xzlab_org & co present a study of excessive zeroes in spatial transcriptomics. In 20 datasets using 11 different technologies, genes can be modeled with Poisson or negative binomial, showing that accounting for zero inflation is not necessary

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@yingma0107

Ying Ma

6 months

Congrats on the great work published in @GenomeBiology ！

@SunShiquan

Shiquan Sun, PhD

6 months

Our new method, TDEseq has been published on @GenomeBiology . It primarily builds upon a linear additive mixed model framework to facilitate the detection of four potential temporal gene expression patterns, i.e., growth, recession, peak, or trough.

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@yingma0107

Ying Ma

10 months

A Bayesian polygenic risk score (PRS) method that leverages shared genetic effects across ancestries to increase PRS portability

@juhyunk_

Juhyun Kim

10 months

BridgePRS leverages shared genetic effects across ancestries to increase polygenic risk score portability #journals #feedly

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@yingma0107

Ying Ma

1 year

🎉👏Big congratulations to Dr. @BhramarBioStat on this well-deserved achievement! 🌟 We are truly blessed to have such an exceptional and inspiring leader in our Umich Biostats department. 🌟 Thank you for your continuous support and invaluable suggestions!

@BhramarBioStat

Bhramar Mukherjee

@BhramarBioStat

1 year

Cannot believe this happened. A surreal feeling. I had a planned thread and a composed reaction but cannot remember a word of it. Tears of joy in my eyes this evening to receive the highest professorship of this magnificent University...Thanks @UMich @umichsph @UMRogelCancer

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@yingma0107

Ying Ma

1 year

@roberta_devito Congratulations!🎊🎉🎈

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@yingma0107

Ying Ma

3 years

Check our new manuscript "ExPRSweb - An Online Repository with Polygenic Risk Scores for Common Health-related Exposures" () as well as our comprehensive interactive online repository of exposure PRS ().

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ExPRSweb - An Online Repository with Polygenic Risk Scores for Common Health-related Exposures

Complex traits are influenced by genetic risk factors, lifestyle, and environmental variables, so called exposures. Some exposures, e.g., smoking or lipid levels, have common genetic modifiers...

www.medrxiv.org

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@yingma0107

Ying Ma

8 months

Congragts, Maria! Fantastic work!

@mariabrbic

Maria Brbic

8 months

Our 🪐SATURN method is now out in @naturemethods ! SATURN paves the way for universal cell embeddings, enabling integration of datasets across different species 🐒🐁🧍🐟🐸 Using protein language models, we encode biological meaning of genes in scRNA-seq datasets.

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@yingma0107

Ying Ma

10 months

Congrats! 🎉🎊🍾

@StableMarkets

Arman Oganisian

10 months

Excited to share that @PCORI has awarded funding for our proposed work developing Bayesian machine learning methods for causal inference! Thanks to Roee Gutman (co-PI) & others at @Brown_SPH @Brown_Epi @BrownUResearch @BrownMedicine @BrownUniversity

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@yingma0107

Ying Ma

2 years

Very nice work！ @_JiEun_Park_

@_JiEun_Park_

Ji-Eun Park

2 years

Excited to share this work, collab with @mikelove et al!! Diffsig can test the association btwn mutational signatures and “risk factors” which can be any variables of interest – continuous or categorical – and multiple risk factors can be tested at once:

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@yingma0107

Ying Ma

11 months

Congratulations!🎉🎊🍾🎈

@jsb_ucla

Jingyi Jessica Li (李婧翌)

11 months

Our single-cell RNA-seq and ATAC-seq read simulator scReadSim is now online at @NatureComms scReadSim mimics real data at read-sequence and read-count levels, and it provides ground truths: UMI counts for RNA-seq and open chromatin regions for ATAC. 1/

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@yingma0107

Ying Ma

2 years

Amazing work！

@minouye271

Mike Inouye

2 years

📣📣 Latest paper from the lab just out @Nature ! An atlas of genetic scores to predict multi-omic traits A new community resource to genetically impute multi-omics data at population-scale. Check out OmicsPred portal

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@yingma0107

Ying Ma

4 months

@XiuweiZhang @ayirpelle @naturemethods Thank you for your kind words! Looking forward to connecting with you in future conferences!

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@yingma0107

Ying Ma

1 year

@DrMingyaoLi @BrownBiostats @BrownCCMB Thank you very much, Dr. Li! Learned a lot from your work!

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@yingma0107

Ying Ma

3 years

@_JiEun_Park_ @shang_lulu @WancenM @FennecPaaaw It was so happy to meet and chat with you all！Hope we can meet again in future conferences！

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@yingma0107

Ying Ma

2 years

@GuTian_TianGu @BhramarBioStat Congratulations, Tian!

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@yingma0107

Ying Ma

1 year

@KarthikeyaniC Thank you, Karthikeyani! Also big congrats on your new position! Looking forward to potential collaborations!

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@yingma0107

Ying Ma

3 years

@cgao90 Congratulations！So happy for you！

@NatureBiotech

Nature Biotechnology

3 years

Iterative single-cell multi-omic integration using online learning

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@yingma0107

Ying Ma

1 year

@xubo_yue @Northeastern Congrats! Professor Yue to-be! Happy for you!

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@yingma0107

Ying Ma

2 years

(2) impute cell type compositions and gene expression levels, thus enabling the construction of a refined spatial tissue map.

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@yingma0107

Ying Ma

1 year

@emilyk_roberts @BrownBiostats @BrownCCMB Thank you so much for your support, Emily!

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@yingma0107

Ying Ma

1 year

@FennecPaaaw @GenomeBiology Congratulations! 🎉🎊🎈

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@yingma0107

Ying Ma

1 year

@lmwebr @NatureComms Congratulations! 🎉 🎉 🎉

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@yingma0107

Ying Ma

1 year

@LabWelch @JialinLiuSKP Big congratulations！👏👏👏👍👍👍

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@yingma0107

Ying Ma

1 year

@yunliunc @NatureGenet @YinShenLab @LiGanLab Congratulations! 🎉🎊🍾

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@yingma0107

Ying Ma

1 year

@Iqbalhu76038412 Thank you for your interest in my research! We are always open to working with motivated and talented students. However, the PhD admissions process in our department is managed though the Admission Committee. For more information, please see

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Application Requirements

Applications to our graduate programs are reviewed holistically by committee.

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@yingma0107

Ying Ma

6 months

@shang_lulu Thank you for your support, Lulu!

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@yingma0107

Ying Ma

1 year

@AbhayHukkuBST Thank you, Abhay! I hope all is well with you!😊💪😀

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@yingma0107

Ying Ma

4 months

@Echoes5296 @naturemethods Thank you, Ryan!

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@yingma0107

Ying Ma

1 year

@SatpathyOnTruth Thank you, Dr. Satpathy!

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@yingma0107

Ying Ma

6 months

@Iam_mfawad Thank you!

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@yingma0107

Ying Ma

2 years

The correct link of our ExPRSweb repository is here:

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@yingma0107

Ying Ma

1 year

@EnCheng23 Thank you, Prof. Cheng! Congrats on your new position, too! 🎉🎉🎉🎉

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@yingma0107

Ying Ma

6 months

@BhramarBioStat @umichsph @YaleSPH Huge congratulations! Wish you all the best in your new journey!

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@yingma0107

Ying Ma

4 months

2. We benchmarked IRIS against diverse methods and demonstrated its advantages through in-depth analysis of six SRT datasets from different technologies including 10x Visium, ST, Slide-seq, Vizgen MERFISH, Stereo-seq, and 10x Xenium across various tissues.

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@yingma0107

Ying Ma

1 year

@diwwang Thank you for your support, Di! Miss the time we spent together!

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@yingma0107

Ying Ma

1 year

@lmwebr @BUBiostats @BUSPH Big congratulations, Lukas! 🎉🎊🍾🎈

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@yingma0107

Ying Ma

6 months

@BoWang87 Thank you!

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@yingma0107

Ying Ma

1 year

@weizhouw @CGM_MGH @harvardmed @broadinstitute @StanleyCenter Congratulations! 🎉🎊🍾🎈

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@yingma0107

Ying Ma

1 year

@DrMingyaoLi @NatureComms @ZhangQihuang @PennGGEB @UPennDBEI Great work! Congratulations! 🎉 🎉🎉

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@yingma0107

Ying Ma

6 months

Congratulations on the great work! 🎉🎉🎉

@DurenZhana

Zhana Duren都仁扎那

6 months

Excited to share our paper in @NatureBiotech : Linger, a computational method for gene regulatory network inference from single cell multiome (RNA+ATAC) data.

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@yingma0107

Ying Ma

2 years

@_JiEun_Park_ Thank you very much!!!!! 💪💪💪

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@yingma0107

Ying Ma

6 months

@Ella_Maru Thank you!

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@yingma0107

Ying Ma

1 year

@MFawad02 Thank you, Muhammad!

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@yingma0107

Ying Ma

2 years

@emilyk_roberts Big congrats！Emily！

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