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Marianna Rapsomaniki Profile
Marianna Rapsomaniki

@marianna_raps

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Tenure-Track Assistant Professor @unil and Biomedical Data Science Center @CHUVLausanne . AI/ML for single-cell and spatial biology.

Zurich, Switzerland
Joined April 2009
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@marianna_raps
Marianna Rapsomaniki
8 months
After more than 8 years at IBM Research Zurich, it's time for a new chapter: 📢 I am more than thrilled to join the University of Lausanne @unil and the Biomedical Data Science Center at @CHUVLausanne as a tenure-track Assistant Professor! 🎉
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@marianna_raps
Marianna Rapsomaniki
5 months
📢 We are hiring! 📢 Are you a MSc/PhD👩‍🎓👨‍🎓 passionate about #AI #ML in #cancer , looking for your next career step? Join our newly-founded AI/ML for Biomedicine group part of the Biomedical Data Science Center at @unil and @CHUVLausanne in beautiful Lausanne!🇨🇭🏔🌈 👇
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@marianna_raps
Marianna Rapsomaniki
4 years
How does 3D genome structure affect DNA replication dynamics? Very excited to present our work with @JonasWindhager @amepaine in the @cosi_sysmod of #ISMB2020 tomorrow at 10.40am EDT! Preprint: Code:
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@marianna_raps
Marianna Rapsomaniki
3 years
🎉🍾 Absolutely thrilled that our project PROMETEX was awarded an @snsf_ch #Sinergia grant! For the next 4 years we'll be joining forces with @MariannKruithof @unibern and @thalexandrov @embl to develop #personalized treatments for #prostatecancer ...
@MariannKruithof
Marianna Kruithof-de Julio
3 years
Congrats to our PROMETEX team @thalexandrov @marianna_raps for winning @snf_ch #SINERGIA grant to develop personalized treatment for prostate cancer patients using high content single-cell metabolite profiling #prostate #Cancer @unibern @EMBL @IBMResearch @DBMR_UniBe @inselgruppe
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@marianna_raps
Marianna Rapsomaniki
2 years
Black days for Greece. In the country with the worst rail network in Europe, deadly train accident kills dozens. Among the dead many students. Their friends pay their respects - officials don't send psychologists but fully armed riot police. I have no words. #τεμπη_εγκλημα
@chris_avramidis
Chris Avramidis
2 years
Είναι αυτή η πιο ντροπιαστική στιγμή της τετραετίας για την @hellenicpolice & τον @theodorikakosp ? Οπλισμένα ΜΑΤ με φορεμένες μάσκες αμαυρώνουν τις στιγμές πένθους των φοιτητών που χασαν τους ανθρώπους τους. Ακόμα και οι κατοχικοι στρατοί το πένθος το σέβονται. #Τεμπη
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@marianna_raps
Marianna Rapsomaniki
4 years
I am super excited to share our latest work, out now in @NAR Genomics and Bioinformatics! 1. open-access paper: 2. open-sourced code and data: Buckle up for a Tweetorial 👇
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@marianna_raps
Marianna Rapsomaniki
6 years
Our amazing colleague Matteo Manica @drugilsberg successfully defended his PhD thesis yesterday at ETH Zurich, summarizing 3 years of intense, exceptional research! Congrats from the whole @IBMResearch Zurich Lab! @PrECISE_H2020
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@marianna_raps
Marianna Rapsomaniki
2 years
Third day of the #ComboTherapiesIdeasLab in beautiful Armonk NY - great people, seeds of ideas planted, let’s see them grow! 🌱 @NCICancerBio @IBMResearch
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@marianna_raps
Marianna Rapsomaniki
4 years
I got into CompBio because of the first female researcher I met in my ALL MALE faculty department. And I became a researcher because of a female Professor in my Masters, who became my PhD mentor. #WomenInSTEM mentorship is more than career progress, it’s about representation.
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@marianna_raps
Marianna Rapsomaniki
5 years
After two years in the making, our joint effort on mapping the breast cancer ecosystem at a single cell level is finally out! Big thanks to our collaborators at the @BodenmillerLab , it’s been a blast analyzing this tiny dataset :-) @IBMResearch
@BodenmillerLab
Bodenmiller lab
5 years
194 patient samples, 26 million single cells: our atlas of breast cancer ecosystems reveals links to poor prognosis and immunosuppression . Thanks to all our collaborators, especially @marianna_raps , @MariaRoCompBio , PATH foundation and @UniSpitalBasel
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@marianna_raps
Marianna Rapsomaniki
7 years
Glad to see our @NatureComms paper with @xiaokang_lun @BodenmillerLab on cell-cycle and cell-volume heterogeneity out! Web app coming soon, subscribe to be informed!
@IBMResearch
IBM Research
7 years
IBM and @uzh_news_en scientists use #MachineLearning to sort cells based on their lifecycle to reveal differences between healthy and diseased tissues - the technique will be available for free in the cloud @NatureComms @SystemsXch
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@marianna_raps
Marianna Rapsomaniki
2 years
Are you an experienced #softwareengineer who wants to make an impact in #healthcare ? Join us in IBM Research Zurich! We are committed to #diversity - female candidates are strongly encouraged to apply! Details: @GR_WomenSTEM @GreekGirlsCode #WomenInSTEM
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@marianna_raps
Marianna Rapsomaniki
3 years
Excited to present our team's work on #spatial analysis of #tumorecosystems in this Cell Press webinar! Registration is free - check the link 👇 to subscribe!
@CellPressNews
Cell Press
3 years
Free Cell Press webinar, #Spatial #biology and cancer, speakers Marianna Rapsominiki @IBMResearch @marianna_raps & Itai Yanai @nyuniversity @ItaiYanai , March 8 at 12 pm ET #CPWebinars
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@marianna_raps
Marianna Rapsomaniki
3 years
Wonderful way to kickoff 2022 - our #tumorheterogeneity review is now out in print @TrendsinBiotech 🎉🍾 Link to paper (50-day open-access): A thread (1/8):
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@marianna_raps
Marianna Rapsomaniki
4 years
Doing a Master program at ETH in Computer Science/Bioinformatics and interested in doing your thesis @IBMResearch on an exciting topic combining deep learning and biology? @drugilsberg and me are excited to meet you! To apply:
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@marianna_raps
Marianna Rapsomaniki
5 months
Topics of special interest include modeling the tumor #microenvironment , and predicting the effects of #drug perturbations at a patient level. Hiring at all career levels - to apply: - PhD: - PostDoc: 👇
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@marianna_raps
Marianna Rapsomaniki
3 years
Excited to share TECH-3D, our humble contribution towards prediction of #3Dgenome structure from #HiC data, recently accepted to the @lmrl_bio #NeurIPS2021 workshop! Work by super talented master student Tristan Meynier (not on Twitter). Last #tweetorial of 2021, 🧵- alert!
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@marianna_raps
Marianna Rapsomaniki
7 months
Less than 1 week left for our #AI for #DrugDiscovery Track at #AMLD2024 ! 🚀Stellar invited talks on #GenAI for antimicrobial peptides @ewa_szczurek , cell perturbations @mo_lotfollahi , #chemistry Jessica Lanini, and Bayesian modeling @DRoqueiro 🌟Posters and contributed talks⬇️
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@marianna_raps
Marianna Rapsomaniki
3 years
I had a lot of fun talking to @GreekGirlsCode about my “unconventional” career journey, my passion for Biology and my experiences as mom and #womeninSTEM ! Thanks for including me and for all the work you do 👍🏻💪🏻 @IBMResearch @Momademia
@GreekGirlsCode
Greek Girls Code
3 years
📢 The GGC Interview! At @greekgirlscode we are featuring interviews with incredible Greek women in #science and #tech !Meet Marianna Rapsomaniki, a Research scientist at IBM Research, Switzerland. Read more about Marianna and her research here ⬇️
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@marianna_raps
Marianna Rapsomaniki
2 years
Check out our computational framework scQUEST, reproducing our #singlecell #breastcancer atlas analysis, now published as a protocol in @STARProtocols ! - open-source code: - original paper:
@STARProtocols
STAR Protocols
2 years
Check out this #protocol by Dr. Maria Anna Rapsomaniki @IBMResearch @BodenmillerLab @Johanna_Wagner_ @martinelliadr for the use of scQUEST, an open-source #Python library to quantify tumor ecosystem heterogeneity in patient cohorts: Research @CellCellPress
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@marianna_raps
Marianna Rapsomaniki
3 years
After what feels like *forever*, super excited to attend the first in person conference @appliedmldays and talk about how advances in #AI and #spatial #singlecell biology can lead to new #biomarker discovery! Anyone else in Lausanne next Monday? @IBMResearch
@appliedmldays
Applied Machine Learning Days
3 years
AI & Pharma – Track spotlight ☄️ Listen to experts sharing their experiences in using AI/ML for Pharma R&D usecases in drug discovery and development! Join us on March 28 at #AMLDEPFL22 – organized by @OwkinScience More information ➡️
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@marianna_raps
Marianna Rapsomaniki
3 years
Had such a great time participating in this #careeradvice session and sharing my experiences as a female and a mom in #industry and #academia !
@WomenPositively
Symposium Women+ { Γυναίκες Θετικά } 🧪 ⚙️ 🔭💡
3 years
#careeradvice 💥 Thank you @RealScienceEdu for this amazing & insightful session 👏🏼 We have still lot time⏰ to go & lots to discuss! JOIN NOW the 💬 over career challenges & paths in #academia & #industry and ask your ⁉️ directly to the panelists 💪🏻 👉🏼
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@marianna_raps
Marianna Rapsomaniki
5 years
Attending my first ever virtual @embl conference with so many interesting talks and posters. Technical problems aside, we should have more of these! Check out our DNA replication modelling work by @amepaine (👏 to @Kerryn_Elliott 's drawing) and @JonasWindhager #EES4Dimensional
@Kerryn_Elliott
Dr Kerryn Elliott 🇦🇺🇸🇪
5 years
#EES4Dimensional short talk from Amelia Paige at IBM Research
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@marianna_raps
Marianna Rapsomaniki
6 years
First day of #ECCB18 in the amazing Stavros Niarchos Foundation with @drugilsberg and @mynameiselina . Great job organizing and looking forward to a great conference! @IBMResearch
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@marianna_raps
Marianna Rapsomaniki
3 years
Very excited to be taking over this week @GreekGirlsCode - stay tuned if you wanna hear more about #computationalbiology , #singlecell analysis and #machinelearning !
@GreekGirlsCode
Greek Girls Code
3 years
Good morning everyone from sunny #Zurich ! My name is Marianna Rapsomaniki and I am super excited to be taking over @GreekGirlsCode for this week!   #computationalbiology , #ibmresearch , #girlsinstem #WomenInSTEM
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@marianna_raps
Marianna Rapsomaniki
2 years
Very excited to chair a session with @carmonation on #singlecell methods at @BC2Conference - great talks by many speakers, including @dominic_grun ! Abstract submission is now open - if you work on #singlecell #datascience this is your chance to showcase your work! Details ⬇️
@BC2Conference
[BC]2
2 years
🎤 We’re pleased to announce that @dominic_grun ( @CIBSS_UniFR ), will present his latest research at [BC]2 in the session 'Methods in #singlecell #DataAnalysis : from pre-processing to biological inference'. 👉Interested in participating? Submit an abstract
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@marianna_raps
Marianna Rapsomaniki
6 years
At #eccb18 , interested in #cytof data analysis and #cellcycle heterogeneity? Come by Hall 5A at 15.30 to hear all about our new method #CellCycleTRACER . @SystemsXch @IBMResearch @BodenmillerLab
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@marianna_raps
Marianna Rapsomaniki
9 months
Join our Track on #AI for #drugdiscovery at #AMLD2024 March 25 in Lausanne 🇨🇭! 🔥 Sessions on #AI for #molecules , #singlecell #omics 🔊 Stellar invited talks from @mo_lotfollahi @fra_grisoni and @DRoqueiro 🗒️ Submit your abstract and get selected for a short talk or a poster 👇
@appliedmldays
Applied Machine Learning Days
9 months
The call for Posters is now open for AMLD EPFL 2024! Passionate about AI and machine learning? Join a track at AMLD EPFL 2024! Find out more here. Early Bird rates until 25 January. Register now! #AMLDEPFL2024 #AI #MachineLearning
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@marianna_raps
Marianna Rapsomaniki
7 years
Panel on Machine Learning for Healthcare with our own Maria Gabrani @IBMResearch at #WiDSZurich2018
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@marianna_raps
Marianna Rapsomaniki
3 years
Αυτό το Σάββατο θα συζητήσουμε για τις δυνατότητες που ανοίγει ο προγραμματισμός στη Γενετική και τη Βιολογία - πολλές ενδιαφέρουσες ομιλίες ΚΑΙ hands on workshop σε R! Συνδιοργάνωση @GreekGirlsCode και ΣΙΓΕ, η εγγραφή είναι δωρεάν, πληροφορίες εδώ ⬇️
@GreekGirlsCode
Greek Girls Code
3 years
Σύγχρονες ψηφιακές δεξιότητες προγραμματισμού & εφαρμογές τους στη Γενετική του Ανθρώπου Συνδιοργάνωση: ΣΥΝΔΕΣΜΟΣ ΙΑΤΡΙΚΩΝ ΓΕΝΕΤΙΣΤΩΝ ΕΛΛΑΔΑΣ & @GreekGirlsCode @e_balatsou @Elpida_Vnz @ADestouni @athinavidaki @eirini_tsi @nidaios @marianna_raps Εγγραφή
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@marianna_raps
Marianna Rapsomaniki
4 years
So so proud of my friend, great collaborator and amazing scientist Johanna! Best of luck to all your future endeavours 👏💪🥇
@DQBM_uzh
Department of Quantitative Biomedicine
4 years
DQBM is delighted to see Johanna Wagner-Albrecht @bodenmillerlab win the 2020 Faculty of Science Annual Thesis Award (Jahrespreis), awarded during the UZH Dies academicus. Congratulations, Johanna! #UZH #DQBM
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@marianna_raps
Marianna Rapsomaniki
4 years
In our group we have been using COSIFER for network inference for quite some time, give it a try! Available both as a Python package and web app, and paper just out! Congrats to @drugilsberg and all the authors! 🥇👏👇🥳
@drugilsberg
Matteo Manica
4 years
Willing to infer a network from your data, but not quite sure which method to use 🤔. COSIFER comes to the rescue: Application note just published in @OUPBioinfo from @IBMResearch and funded by @PrECISE_H2020 and @iPC_H2020 . Details in the thread.
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@marianna_raps
Marianna Rapsomaniki
2 months
So happy to see our project with @Guy_Ron and @ShemaEfrat on using #GenerativeAI approaches to create a unified atlas of spatial proteomics selected for funding by @cziscience ! @FBM_UNIL
@Guy_Ron
Guy Ron
2 months
Thrilled to be one of the awardees of the CZI 2024 Data Insights grant. Together with @marianna_raps and @ShemaEfrat . Looking forward to an exciting collaboration made possible by @cziscience .
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@marianna_raps
Marianna Rapsomaniki
5 months
We are committed to building a diverse and inclusive team - candidates of all backgrounds / identities are encouraged to apply! PS: If you are looking for a master thesis/internship instead, don't hesitate to apply (pick the PhD ad and specify details in your cover letter).
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@marianna_raps
Marianna Rapsomaniki
3 years
...combining in vivo, ex vivo and #organoid models, #singlecell #metabolomics , and #machinelearning and #deeplearning models. We'll be looking for candidates soon, stay tuned for announcements for #postdoc and #PhD positions!
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@marianna_raps
Marianna Rapsomaniki
5 years
Congrats to @drugilsberg and the rest of the amazing team from @IBMResearch Zurich!
@drugilsberg
Matteo Manica
5 years
#PaccMann : A deep learning tool for explainable cancer drug sensitivity from @IBMResearch . The paper is finally out in @Mol_Pharm . Paper: TensorFlow: PyTorch: Try it out online:
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@marianna_raps
Marianna Rapsomaniki
3 years
Delighted to participate to the first @WomenPositively symposium and share my experience and #careeradvice as a for research in industry and academia! For info please check! ⬇️ #WomenInSTEM #WomeninScience
@WomenPositively
Symposium Women+ { Γυναίκες Θετικά } 🧪 ⚙️ 🔭💡
3 years
#careeradvice session💥Dr. @marianna_raps is a Research Scientist at the @IBMResearch in Zurich🇨🇭in the area of Computational Biology. Her research focuses on spatiotemporal tumor heterogeneity through single-cell analysis, #machineleaning & #mathematical #modeling
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@marianna_raps
Marianna Rapsomaniki
7 years
Group selfie with the @IBMResearch crowd @anca_ciubotaru @charlottebunne @phineas_zu @mynameiselina at #WiDSZurich2018 Congrats to all girls for organizing 👏🏻
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@marianna_raps
Marianna Rapsomaniki
5 months
You will work in a fantastic environment where fundamental and clinical research meet to accelerate new breakthroughs and transform patient care. Our mission is to develop new AI/ML approaches to elucidate #cancer mechanisms using heterogeneous ( #spatial ) #singlecell data 👇
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@marianna_raps
Marianna Rapsomaniki
3 years
Last day tweeting from @GreekGirlsCode - the week passed really fast! Today I am talking about mentoring, career choices and pursuing a career in #STEM , would love to hear from you as well ☺️
@GreekGirlsCode
Greek Girls Code
3 years
Goor morning everyone! Crazy spring weather again in #Zurich with 🌧️ and some☀️ Last day tweeting from this account, today we'll talk about a career in #STEM combining #MachineLearning #computationalbiology and #coding .
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@marianna_raps
Marianna Rapsomaniki
5 years
Guess that means next time the beers are on you guys 😂 Congrats well deserved!!!
@drugilsberg
Matteo Manica
5 years
Congrats to @JannisBorn and all the team from @IBMResearch that are working on the #PaccMann project. Want to know more about it? PaccMann: PaccMannRL:
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@marianna_raps
Marianna Rapsomaniki
3 years
It was a great pleasure talking to this event, thanks @GreekGirlsCode and SIGE for organizing and thanks to all for @the great questions!
@GreekGirlsCode
Greek Girls Code
3 years
Our online conference closes with @marianna_raps who presents her significant work in AI & ML and breast cancer 🧬👩‍🔬🖥️👩‍💻 #WomenInSTEM #WomenInScience #breastcancerresearch #coding
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@marianna_raps
Marianna Rapsomaniki
8 months
Working with single-cell datasets and struggling with integration? Check out STACAS, an R package for semi-supervised single-cell data integration from the @carmonation lab 👇🏻
@carmonation
Santiago Carmona 🧬 🖥️ 🧑🏾‍🔬
8 months
Happy to share the peer-reviewed version!⛺️ Now including additional analyses of i) impact of celltype composition imbalance across samples, and ii) noise in celltype labels on integration performance. Thanks to reviewers & editor for constructive feedback
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@marianna_raps
Marianna Rapsomaniki
4 years
An important contribution towards creating a reference T cell atlas from Santiago’s team @carmonation Check out the preprint, their code is open on github:
@carmonation
Santiago Carmona 🧬 🖥️ 🧑🏾‍🔬
4 years
Projecting single-cell transcriptomics data onto a reference T cell atlas to interpret immune responses
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@marianna_raps
Marianna Rapsomaniki
6 years
Exciting second day at #RECOMB2018 , amazing keynote by Francois Spitz on 3D genome organization! @drugilsberg @IBMResearch @SystemsXch @PrECISE_H2020
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@marianna_raps
Marianna Rapsomaniki
8 months
🌟 It is official: the Rapsomaniki lab is opening its doors on March 1st, 2024! 🌟 📢 I will be soon looking for motivated #PhD students and #Postdocs : if you are passionate about all things #AI #ML for #singlecellanalysis and #spatialbiology , keep an eye for announcements soon!
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@marianna_raps
Marianna Rapsomaniki
5 years
A nice summary of our recent collaboration with the @BodenmillerLab , thanks @VentureBeat !
@chrispsciacca
Chris Sciacca
5 years
IBM researchers analyze the makeup of breast cancer cells with AI | VentureBeat ⁦ @marianna_raps ⁩ ⁦ @MariaRoCompBio ⁩ ⁦ @BodenmillerLab
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@marianna_raps
Marianna Rapsomaniki
2 years
Very much looking forward to this event to discuss all things #cancer and #AI - from understanding cell-cell interactions to modeling drug perturbations. Join for a series of ✨talks - attendance is free with online registration, deadline today! 👇🏻
@NCI_CSSI
NCI StrategicSci
2 years
Register by March 31st for the Cancer AI Research Workshop. This two-day event will examine the state of #ArtificialIntelligence methods, explore how they can be applied to #CancerResearch , and discuss how to further advance #MachineLearning . Register:
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@marianna_raps
Marianna Rapsomaniki
5 years
How can we effectively fight this pandemic? What is the best strategy? What can we learn from other countries? Many questions eloquently answered and many options explored by some of the leading experts in the field. The only way out is science!
@trvrb
Trevor Bedford
5 years
I've been mulling over the @MRC_Outbreak modeling report on #COVID19 mitigation and suppression strategies since it was posted on March 16. Although mitigation through social distancing may not solve things I believe we can bring this epidemic under control. 1/19
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@marianna_raps
Marianna Rapsomaniki
2 years
@jacasiegel Although I understand where this is coming from, I think what it’s more important to actually demand higher salaries. In many European countries postdocs are not underpaid and can lead a normal life and start a family - parental leave included.
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@marianna_raps
Marianna Rapsomaniki
7 months
#graphML @sophiakrix and #docking from Michael Backenköhler 🔥Panel discussion: Beyond the Buzz: #LLMs and the Future of #DrugDiscovery ! Together with @raphg @JannisBorn @pushpak_pati @DorinaThanou , we are very excited to meet you soon in beautiful Lausanne! @appliedmldays
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@marianna_raps
Marianna Rapsomaniki
4 years
If you have a background in Data Science and are interested in working in one of the most exciting research topics with a great new PI @hartjackson , check this out! 👇
@hartjackson
Hartland Jackson
4 years
The Jackson Lab is opening alongside the re-opening, and building a team focused on multiplexed imaging of cancer #LTRI . We are now looking for a Lab Manager and Data Scientist, and recruiting PostDocs and Students in the coming months. Job postings below.
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@marianna_raps
Marianna Rapsomaniki
2 years
Looking for a highly interdisciplinary Master thesis project? Passionate about designing new solutions for #drugdiscovery ? We want to meet you! Join our team at @IBMResearch Zurich for an exciting project at the intersection of #AI , #QuantumComputing and #singlecell Biology.
@JannisBorn
Jannis Born
2 years
Are you a master student? Eager to learn about #QuantumComputing ? Combining optimization ( #OptimalTransport ) with #MachineLearning & applying to cell biology sounds interesting? Come join us @IBMResearch for an interdisciplinary thesis! Apply: Please RT!
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@marianna_raps
Marianna Rapsomaniki
2 years
@teodorolaino @SwissChemistry @IBMResearch Many congratulations everyone for this well deserved recognition! So nice to see you all happy and smiling :-) @drugilsberg looking particularly dapper 😜
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@marianna_raps
Marianna Rapsomaniki
4 years
Another great contribution from our colleague @drugilsberg - we can't keep up with you anymore 😀 If you are interested in tumor clonal evolution, se sure to check out the paper and try out the tool!
@drugilsberg
Matteo Manica
4 years
Curious to learn how to estimate tumor clonal composition using WES/WGS from multiple biopsies. Check out Chimaera: . Just published in @Nature_NPJ from @IBMResearch and funded by @PrECISE_H2020 . More details in the thread.
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@marianna_raps
Marianna Rapsomaniki
5 years
Brilliant piece by @ReadMoreScience
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@marianna_raps
Marianna Rapsomaniki
4 years
First good news of 2020. #GDtrial #ΔενΕιναιΑθωοι
@ajplus
AJ+
4 years
Greek neo-Nazi party Golden Dawn was found guilty of running a criminal organization. 60+ members were charged for crimes like attacks on migrants and killing an anti-fascist rapper. Its leaders face up to 15 years in jail. Thousands rallied in Athens: "Fascism, Never Again"
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@marianna_raps
Marianna Rapsomaniki
6 years
Congrats @mynameiselina and Maria!
@IBMResearch
IBM Research
6 years
IBM scientists talk about #AI and healthcare at the Zurich @forwardcf #forwardfestivals
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@marianna_raps
Marianna Rapsomaniki
5 years
Organizers of data science and machine learning conferences (NeurIPS, ICML, AISTATS, ICLR, UAI, ...): Allow remote paper & poster presentations at conferences - Sign the Petition! via @Change
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@marianna_raps
Marianna Rapsomaniki
1 year
Interested in all things generative models for molecules? Then do not miss this talk from @JannisBorn !
@JannisBorn
Jannis Born
1 year
Honored to talk at @Mila_Quebec 's M2D2 (Molecular Modeling & Drug Discovery) series! 🤩 If you want to hear about Generative Language Models in Molecular Discovery: Regression Transformer, GT4SD and Beyond, tune in *today at 5pm CEST / 11am ET* on Zoom:
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@marianna_raps
Marianna Rapsomaniki
3 years
I might be unable to pronounce half the stuff in this animation, but can’t deny how cool this looks!
@skepteis
Daniel Probst @[email protected]
3 years
1/ I'm excited to share our latest preprint on leveraging machine learning for more sustainable catalysis in chemical industries. We supercharged IBM RXN @ForRXN with biocatalysis. Here's how... @drugilsberg , @Yves_Gaetan_ , @teodorolaino , @IBMResearch
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@marianna_raps
Marianna Rapsomaniki
3 years
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@marianna_raps
Marianna Rapsomaniki
3 years
A great public resource for anyone working on method development for computational pathology, containing real-world complex H&E stained images - many congrats to the people involved! 👏
@pushpak_pati
Pushpak Pati
3 years
1/ ⏰ The BRACS dataset is out! Meet the large cohort of H&E stained breast cancer RoIs. A joint effort by @istitutotumori , @ICAR_CNR & @IBMResearch @GuillaumeJaume @afoncubiertar @mariagabrani More info 👉 & 👇
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@marianna_raps
Marianna Rapsomaniki
4 years
@afoncubiertar I am in awe of how spotless your counter is while you are cooking 😱
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@marianna_raps
Marianna Rapsomaniki
4 years
A great distinction for a great scientist! Many congratulations to the amazing @Lne_Chatzi 👏👏
@Lne_Chatzi
Eleni Chatzi
4 years
I am honored to receive the #Huber #Research #prize , awarded by the American Society of Civil Engineers #asce since 1949. Humbled to join such a distinguished list of colleagues working in the field of #civil #engineering .
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@marianna_raps
Marianna Rapsomaniki
4 years
Excellent piece of investigation, this is really next level scientific misconduct.
@stephaniemlee
Stephanie M. Lee
4 years
SCOOP: I obtained a whistleblower complaint about Stanford's COVID-19 study. Turns out JetBlue's founder, a critic of the economic shutdowns, helped fund it. And John Ioannidis and others allegedly ignored internal scientists' concerns about the test.
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Marianna Rapsomaniki
5 years
@drugilsberg @tse_nit @MariaRoCompBio @IBMResearch @PrECISE_H2020 Quite a productive couple of days for our group! Congrats to everyone! 👍
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Marianna Rapsomaniki
4 years
Mind. Blown.
@latifnasser
Latif Nasser
4 years
Ok here we go. Look at the electoral maps by county for the last few decades of US presidential elections.  You’ll notice that the South goes almost uniformly Republican red every time. Duh. But if you look closer, there’s something else there ...
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@marianna_raps
Marianna Rapsomaniki
5 years
Let’s all support the brave medical staff of the University Hospital Zürich and #StayTheFHome !
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@marianna_raps
Marianna Rapsomaniki
2 years
@mormontre @VAndrearczyk @niklexical @adepeursinge As a parent I almost get an anxiety attack watching that 😂
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Marianna Rapsomaniki
3 years
Spot on!
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Marianna Rapsomaniki
3 years
@GR_WomenSTEM In Zurich it’s almost snowing and no, it’s not an April fools joke!
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Marianna Rapsomaniki
2 years
@dbasanta @ItaiYanai And, may I add, listen to his @nightsciencepod !
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Marianna Rapsomaniki
5 years
Congrats!
@drugilsberg
Matteo Manica
5 years
Excited to see PaccMann accepted at #ISMB19 / #ECCB19 for a talk in the #MLCSB #COSI . Paper: Code: Web service on @IBMcloud : @iscb @IBMResearch #paccmann #ai4csb #ai4good
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@marianna_raps
Marianna Rapsomaniki
3 years
Wordle 225 4/6 - I seem to be able to guess words I never knew existed 😱 ⬜⬜⬜⬜🟨 🟨🟩⬜⬜⬜ ⬜🟩🟩🟩⬜ 🟩🟩🟩🟩🟩
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@marianna_raps
Marianna Rapsomaniki
5 years
@drugilsberg @IBMResearch @iPC_H2020 @tse_nit @phineas_zu @ilaaliKO @JannisBorn @MariaRoCompBio Not that you needed that to feel cool, but pretty cool indeed! Congrats everyone!!
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@marianna_raps
Marianna Rapsomaniki
3 years
Beautifully written by @CKalaitzidou !
@GR_WomenSTEM
Greek Women in STEM
3 years
💥Have you ever wondered how #Science & #poetry are connected⁉️Did you know that #MarieCurie was a poet as well ⁉️ Check out this week's #article ✍🏼 by @CKalaitzidou & explore this unique feature of #scicomm @AcademicChatter #GreekWomenInSTEM #WomenInSTEM
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@marianna_raps
Marianna Rapsomaniki
6 years
Congrats @drugilsberg and the rest of the amazing IBM Research Zurich team :-)
@drugilsberg
Matteo Manica
6 years
Very happy to see this work out :)
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@marianna_raps
Marianna Rapsomaniki
3 years
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@marianna_raps
Marianna Rapsomaniki
2 years
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Marianna Rapsomaniki
3 years
@CKalaitzidou I LOVED it, such a refreshing break from reading rigid scientific text ❤️ keep going!!
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Marianna Rapsomaniki
2 years
@AleksandrosSob1 Σε πληροφορώ πως ο Ψαρογιώργης έχει έρθει τους 2 φορές Ζυριχη, μια στο El Lokal (με την θεότητα τον White) και μια στη Rote Fabrik!
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@marianna_raps
Marianna Rapsomaniki
4 years
11/ If you made it so far, THANK YOU! TL; DR: In summary, we show through our model that, depending on the level of analysis, #heterogeneity and #robustness are emerging and non-contradictory characteristics of DNA re-replication.
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@marianna_raps
Marianna Rapsomaniki
3 years
Congrats @carmonation ! Great addition to my to-read list ☺️
@carmonation
Santiago Carmona 🧬 🖥️ 🧑🏾‍🔬
3 years
SO happy to see our paper out!
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@marianna_raps
Marianna Rapsomaniki
3 years
@afoncubiertar I am expecting nothing less but some serious tweeting from you in the next days!
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@marianna_raps
Marianna Rapsomaniki
3 years
(5/8) And then focused on computational approaches used to quantify heterogeneity from said measurements. We summarized the most popular computational frameworks, broadly reused across different data modalities ranging from #molecular to #imaging data:
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@marianna_raps
Marianna Rapsomaniki
3 years
Last, many thanks to @lmrl_bio for organizing such a great workshop - check out the rest of the papers here:
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@marianna_raps
Marianna Rapsomaniki
4 years
12/ Many thanks go to all the amazing co-authors: Stella, Patroula, Manuel, Nikos. This study was performed at the Cell Cycle Lab of @upatras led by Prof. Zoi Lygerou, (check out their amazing work here: ) funded, among others, by an @ERC_Research grant...
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@marianna_raps
Marianna Rapsomaniki
3 years
All the credit for this work goes to Tristan Meynier, who put all his creativity and enthusiasm in this project. Many thanks to @_bunnech for co-supervising and @AkisPapantonis and his team for very interesting discussions and invaluable feedback!
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@marianna_raps
Marianna Rapsomaniki
3 years
@Nibal_Badra @ArbiMarina Well she even taught ME how to pipette, so everything is possible!! @ArbiMarina , happy to see you still inspire people 😍
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@marianna_raps
Marianna Rapsomaniki
8 months
My gratitude goes to the numerous mentors, collaborators, friends and family that shared this path with me since my early PhD years! I can't wait to join such an exceptional research environment, contributing towards the vision of advancing patient care.
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@marianna_raps
Marianna Rapsomaniki
3 years
@GreekGirlsCode Welcome to Zurich! Best time of the year to be around 😊
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Marianna Rapsomaniki
4 years
2/ But first, why do we even bother studying DNA re-replication? Well, multiple studies have shown that re-replication is a mechanism that can result in local copy number gains and gene amplifications, and is thus linked to genomic #instability and #tumorigenesis .
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@marianna_raps
Marianna Rapsomaniki
3 years
@MariannKruithof @GreekGirlsCode @IBMResearch @Momademia The feeling is mutual as I hope you know ❤️
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@marianna_raps
Marianna Rapsomaniki
8 months
@pnathanailidou @grewalsh Beautiful work and huge congrats Patroula!!! 🎉🔥🙌🏻
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