No, not a software problem. More like a biochemistry, genetic, cell and developmental biological, and whole animal complex physiology problem only adressable by decades of federally supported experimental research that makes rocket science seem easy...
@SamTalksTesla
@tlowdon
@daniellevitt22
In principle, I think synthetic RNA (and DNA) has amazing potential. This basically makes the solution to many diseases a software problem.
Our latest work is out today in
@Nature
! Forward yeast genetics meets innate immunity to reveal a secreted effector produced by a human fungal pathogen that promotes pathogenic macrophage polarization via TLR4 and STAT3.
1/5
RT if you dare! Out in
@CellCellPress
today. A revolutionary paper from Sandra Catania in the lab along with important contributions by Phillip Dumesic in the lab and …
Deeply saddened by the passing of Prof. Christine Guthrie, a brilliant and brave scientist who had an enormous influence on the lives of many including my own. 1/6
I ran into a former UCSF student who now has 10 yrs of experience in biotech (oncology). She said that the top companies hire people who are well-trained in how to think/ask questions rather than a specific technique or topic (which changes fast).
#basicscience
This whole “Let’s make WFH a permanent thing” movement underestimates the many benefits of random /ad hoc /hallway interactions and the barrier zoom scheduling is to just having a chat. I for one have had enough WFH for a lifetime.
🥳🎉I am delighted to announce that the Madhani lab
@UCSF
is recruiting at all levels. 2-3 staff and 2-3 fellows. Staff: 1 PhD-level scientist to oversee a cell biology resource development project with 1-2 technicians. Job ads are being spun up now. And... 1/2
I am pleased to announce that we have completed our Cryptococcus neoformans knockout collection. Strains are available without restriction via the Fungal Genetic Stock Center (). New QC information is also included.
Batch effects are the bane of genomics experiments. Sometimes I get strange looks when I say that controls and experimentals need to be prepared on the same day with the same batches of culture media. This paper from 2010 explains why as well as any.
20th anniversary of our lab
@UCSF
this month!! Advice: 1) decide on your scientific and personal values and 2) never stop fighting for them, 3) minimize effort on tasks/people that don’t support your values, 4) be (very) patient and 5) take advice with a grain of 🧂
I want my children to follow their passions, not my expectations. They can pick any profession they want: neuroscientist, immunologist, even yeast cell biologist, all sound wonderful to me.
Lab closed & everyone is 'sheltering in place.' I told the lab that we're not have any Zoom meetings until next week -- let's take some mental health time to adjust and re-orient.
Anybody else being asked to decide who is allowed back in lab? Talk about amplifying inequities. I'm not even sure I have any legal authority to decide. And we're supposed to negotiate with adjacent labs. Imagine an assistant professor negotiating with a full professor...
Point I make repeatedly to trainees: the probability that your paper is accepted is proportional to the clarity and persuasiveness of the writing and figure presentation. It’s at least as important as the results themselves.
Great to be recognized by
@AAAS
! Grateful to past and present lab members who drove basic science projects that pushed the envelope to reach new heights. Looking forward to the next unexpected discoveries!
*ALERT* NIH may be trying to make your favorite model organism database disappear. It is imperative that you respond to the survey link described on this page
Tell them why they shouldn't kill SGD, flybase, wormbase, ZFIN, etc.
Please RT!
Just explained to my brother (who has a PhD from
@MIT
) exactly what a virus is and how they replicate and are transmitted. He didn’t seem to know. And why should he - he studied robotics. Now I might understand why
@elonmusk
is upset about lockdowns-he doesn’t know either.
Emails going around the
@UCSF
campus asking PIs if they have a particular Roche qPCR instrument. The question I have is why the Federal Government isn't buying Roche qPCR machines, RNA extraction, and RT-PCR kits for every hospital lab in the country now.
@SpeakerPelosi
🎉🥳Paper accepted
@MolecularCell
! Congrats to Sandra Catania in the lab on her 3rd paper on Dnmt5!
Three very positive reviews with minimal additional data required.
A good mid-week boost.
Almost identical to this preprint:
Is "Helicopter PI" a term? Been suggesting to jr. PIs that giving people more responsibility for their research is good for all involved. Students shouldn't confuse good mentoring with being given constant direction. RT if you agree -- maybe it will help.
**POSTED TODAY!** We are HIRING. At least 2 tenure-track faculty positions, one in my Dept (Biochemistry and Biophysics) and one in the Cellular and Molecular Pharmacology Dept. , both at the Mission Bay Campus (ignore the photo below!) 1/
Friends: excited to receive an NOA from NIH in support of our SARS-CoV-2 work with Raul Andino (in addition to funding from FastGrants and LGR already in hand). Pls RT as we seek 1-2 postdoctoral fellows (with mol. bio. training) to move this work forward rapidly. Thanks.
Faculty meeting quotes:
"I'm on a task force but we don't know what the task is and what force we have."
"What's the difference between a task force and a committee?"
Recently a collaborator told me that I write so well that I should write the entire grant. So I did. At least this way I didn’t have to deal with mediocre writing. But now I feel used. But paradoxically also satisfied as the grant does read really well. Sigh.
When I was an assistant professor, a senior faculty member implied that I was dressed too casually (I was wearing a t-shirt and shorts). In my defense, I didn't care.
I can’t count the number of times I’ve been asked this. Then when I say I was born in London but grew up in Seattle people say ‘but you have no accent’. Then I say we moved to Kenya when I was a few months old and the US when I was 5 and they get really confused.
A devastating loss. Everybody loved her. For her brilliance, honesty, bluntness, loyalty and zest for life. And she was funny. So very funny. Rest In Peace dear dear friend. Deepest condolences to her family and the
@MIT
community.
We are very sad that
@AngelikaAmon
, first generation PhD student at the IMP, former IMP board member, and lifelong friend of the house, has lost her battle against cancer. Her contributions to science form a lasting legacy we are grateful for. Our thoughts are with her family.
Better days with
@AngelikaAmon
. I’ve been fortunate to have two of her trainees in my lab. Of course I could not live up to their expectations of a PI. She was always supportive of me from the time of my job search to hosting me for a seminar any time I was in town.
“Shields up!” Congrats to our 3rd floor Genentech Hall neighbor
@joeBondyDenomy
and lab on their latest. A bacteriophage nucleus-like compartment shields DNA from CRISPR nucleases | Natuure
🔥Preprint alert 🔥
Phenomenal work from postdoctoral fellow Irene Beusch
@pauletteoctopus
brings a yeast genetics mindset to an essential process in human cells, obtaining new insight into the function of a new player in human cancer. 🧵1/n
Whitehead Institute announced today that the globally respected cell biologist Jonathan Weissman has become the Institute’s newest Member and will be the inaugural Landon T. Clay Professor of Biology at Whitehead Institute:
Dranonican cuts by NIH to model organism databases, particularly a 50% cut in funding for the Saccharomyces genome database. Please contact your representative and ask that funding be restored. Please RT.
@NIH
@NIHDirector
@SpeakerPelosi
MODs in need
As a dean of a major academic institution, I could not have said this. But I will now. Requiring such statements in applications for appointments and promotions is an affront to academic freedom, and diminishes the true value of diversity, equity of inclusion by trivializing it.
BREAKING: Nevada and Colorado join California, Oregon and Washington's "Western States Pact," a regional vision for fighting COVID-19 & modifying stay-at-home orders
For years afterwards Boris cursed that they didn’t just read his CV, with its mesmerising Latin quotes, but unfortunately they asked him to demonstrate his skill set.
A well-written abstract can bolster your chances of publication by stating the major points up-front in a clear and concise manner. Here is an example.
@UCSF
has announced a hiring freeze for all staff and academic positions through June of 2021. Difficult to understand as PIs are paying for their people through grants and fellowships. And if people are doing SARS-CoV-2-related work they may need to hire. Doesn't add up.
HAPPY FRIDAY! Ending the week with a preprint post and a 🧵 ! New work on how a deadly fungal pathogen reprograms innate immunity to its advantage. Hold on to your hat-- there's a lot here to explain: (1/n)
🔥🥳🎉The work we reported at the
@RNASociety
meeting in Boulder last June is out *TODAY* in
@MolecularCell
! Congratulations to Irene Beusch (
@pauletteoctopus
) and coauthors.
Tweetorial on preprint:
Oh great -- my flooded car made the
@nytimes
.
Dude standing to the door is the driver of a different submerged car that I am chatting with from the cab. Tow truck driver came back for him.
Our paper on Spliceosome Profiling it out! Back to back with similar work from
@mooreorless62
. I remember first meeting Melissa at a CSHL RNA processing meeting when she was a postdoc and I was a student. We've come full circle!
Just did an (unpaid) 1 hr outreach session for a corporation explaining to 500 employees how vaccines work, how the mRNA vaccines work and why I consider them extremely safe. Reach out to your non-science local networks -- there is a LOT of demand out there. Do some good!
@stephenfloor
is teaching Linux command line to our incoming Tetrad program students
@UCSF
. Computational skills are increasingly necessary to be an experimental biologist.
A decade late to the Cas9 party but we finally made it. And for a good cause: we can now engineer the genome of Cryptococcus neoformans using just 50 bases of targeting homology and an electroporator. 1/3
piRNAs against a germline-transmitted retrovirus in Koala Bears are derived from unspliced RNA suggesting that stalled spliceosomes are a trigger! Delighted to see that this mechanism seems to be conserved from yeast (Cryptococcus) to mammals! Cell
Never gets old: the look on the face of a lab member when they learn that their paper is accepted in principle. One of the best aspects of being a PI.
#epigeneticsrules
Intronic sequences (but not splicing) protect genes from HUSH-mediated silencing. Another example of the Frustrated Gene concept. Intriguing work from Paul Lehner's Group.
Genome surveillance by HUSH-mediated silencing of intronless mobile elements
Is a PNAS communication really a peer-reviewed paper? It would seem more like a preprint with comments from a couple of friends. If they are indexed in PubMed then shouldn't preprints also be?
Assistant Professor —> Associate Professor —> Professor is extremely lame and makes my friends think I’m an apprentice to a professor. Professor should be the bottom rank and it should be Professor —> Advanced Professor —> Master Professor
Appreciation is nice. Robust funding would actually help. Academic research has been underresourced. Yet how do we know anything about coronaviruses? You guessed it: academic research. But we could have been much further along and for pennies on the bailout dollars.
Chromosome number evolvability is evolvable! Thrilled to be part of work Suzanne Noble showing evolution of a H2A variant and regulated CENPA deposition enables programmed aneuploidy.
Chromatin rewiring mediates programmed evolvability via aneuploidy
My question: why hasn’t
@USCF
solved the bureaucratic problem that prevents PIs from reimbursing lab members, especially trainees, for parking costs during a pandemic? Or why haven’t fees been waived altogether?
Congratulations to my colleague and friend Geeta Narlikar on being appointed as our next department chair (our Dept rotates its chairs). Thanks to Geeta for taking on this thankless job!
Three weeks before the app deadline for our faculty search! If you're looking for a collegial and collaborative environment in which to do cool science (in any area) consider applying. Great colleagues, facilities and city!
Sometimes when I get an
@NIH
grant funded I get a nice letter from my rep
@NancyPelosi
congratulating me on it. Nice to have a rep that appreciates the value of scientific research
@UCSF
.
San Francisco is gearing up to test and trace every COVID case.
@UCSF
medical students are going to help.
@czbiohub
is ramping testing up even more. San Francisco is should one of the safer places to be in the next couple of years.
#publichealth
This Perspective finds that the evidence for in vivo LLPS is often inadequate and urges the application of more stringent criteria to understand the functional role of LLPS condensates in cells.
@MustafaMir16
@XDarzacq
@TjianDarzacq
@dmcswiggen1
Asked by an undergraduate summer student: what's going to be hot in 5 years? I'm told that's what I should be aiming for! Me: asking good questions using genetics and biochemistry. Love influencing young ambitious minds!
Heading to Bethesda for study section. Nearing the end of my second stint. It’s not a fun form of service but an important one. And you cant complain about peer review if you are not willing to serve.
**Stanford peeps** I am super-excited to be giving my first in-person seminar since March 2020! I'll be giving the Frontiers Seminar this Wednesday. Looking forward to seeing some old friends, making some new ones, and meeting the students! It should be a blast!!
Do you truly *LOVE* RNA? If so, do check out our latest paper entitled "Coupling of spliceosome complexity to intron diversity" now out
@CurrentBiology
. 3/3 glowing reviews (it happens!). 1/
Share link :
Hard to believe that
@SpeakerPelosi
‘s office has the time to send PIs
@UCSF
congratulatory notes. Seems like they would be busy with more important tasks.
Oh no! Epigenetic resistance to caffeine - no wonder I have to drink three cups to wake up! But seriously, this paper is important as it demonstrates chromatin-based epimutation as an adaptation an environmental change in S. pombe Great work from
@Allshire_Lab
!
It’s so great to have a
@VP
who knows and appreciates and values that we scientists travel to Bethesda to review grants. How does she know? Her Indian-American mom served on study section when she was a kid! I had no idea until today. What a breath of fresh air and hope.
Cheers and congratulations to our newest medicine laureate David Julius!
Here Julius and his wife Holly Ingraham are celebrating his
#NobelPrize
with a cup of early morning coffee.
Photo: Holly Ingraham.