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@PubPeer@mastodon.social Profile

@PubPeer

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for open evaluation of science. to select the best science.

Joined November 2012
Don't wanna be here? Send us removal request.
@timeshighered
Times Higher Education
4 years
Survey reveals French public has lost confidence in scientists during the coronavirus pandemic
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@EChabriere Ravi d'apprendre que l'IHU est utilisateur de PubPeer. On attire votre attention sur le règlement Notamment les règles concernant : - les insultes - la diffamation - la nouveauté - le minimum d'appui et éventuellement - les théories complotistes
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Congratulations France!
@VidalFrederique
Frédérique Vidal
3 years
La France est une grande nation scientifique: parmi les 10 publications scientifiques les plus citées au monde pendant cette crise, 2 étaient françaises. Grâce à #FranceRelance et à la #LoiRecherche , nous permettons un réinvestissement massif dans la recherche. #60MinutesBusiness
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The online intimidation and legal threats against @MicrobiomDigest , who signs her critiques, are examples of why PubPeer offers the protection of anonymity, which is combined with strict content moderation.
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PubPeer is ten years old today.
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We now have a @zotero extension that indicates which articles in your Zotero library have PubPeer comments. You can find it here. We're interested in any feedback!
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Reminder: PubPeer comments have to be supported with publicly verifiable information: e.g. One cannot write a comment claiming that authors are conflicted without documenting a conflict of interest with publicly verifiable facts.
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PubPeer recently turned ten years old, and in our first ten years our amazing users left 130k comments on ~45k publications across >4k journals. These numbers are impressive and we'd like to build on them and encourage different types of comments. So today we are announcing:
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Our advice in such cases is for the author to avoid publishing.
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Please consider signing this defence of Elisabeth Bik, whistleblowers and post-publication peer-review.
@lonnibesancon
Lonni Besançon 🇫🇷 🇸🇪
3 years
Are you a researcher believing that academic whistleblower's work (e.g., @MicrobiomDigest ) is instrumental to ethical, trustworthy, and honest research, we invite you to read and sign our Open Letter. Letter: Signature collection:
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A reminder: accusations of misconduct and insults are forbidden on PubPeer and this is enforced by our moderation policies. We have no control over what other people write on social media.
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That's interesting. Sychronised "organic" criticism of @MicrobiomDigest in French. Discussion of the chloroquine study is strategic. We counted at least 8 of these. Cc @Le___Doc
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Scientists rally around misconduct consultant facing legal threat after challenging COVID-19 drug researcher
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PubPeer comments are looking great on the @nature website! http://t.co/9EBK52WssH cc @Richvn @noahWG http://t.co/h2XsELodCU
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Flaws pointed out immediately on PubPeer help prevent this recent paper from being used in #antivax propaganda.
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Announcing Peeriodicals, where you are the editor-in-chief:
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"I think that, in two decades, we will look back on the past 60 years — particularly in biomedical science — and marvel at how much time and money has been wasted on flawed research."
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Swedish ISP punishes Elsevier for forcing it to block Sci-Hub by also blocking Elsevier
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Reminder for those interested in hunting bad science: target the science not the scientist.
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@MicrobiomDigest reviews the journals. With receipts. At these journals, the last people to hear about any problems in papers are the readers. Install the PubPeer browser and @zotero extensions to learn what the journals won't tell you:
@MicrobiomDigest
Elisabeth Bik
4 years
Several people asked me what the worst journals are to respond to image duplication or other concerns and/or to retract. Here are a couple from my list: (thread)
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@MicrobiomDigest @nature @lookslikechloe @RetractionWatch So @nature finally acts to protect their readers - nearly one year after the editors knew there were problems. The readers are the product. Consider installing the @PubPeer extensions to receive early warning:
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Starting today, we will begin highlighting comments containing incisive scientific discussion by putting them on the PubPeer front page. We will also reward the best of those comments with prizes of $300.
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@bradpwyble @PsychScientists You could say she also helped us refine and test our moderation policies.
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If you want to guarantee that your anonymous comment won't pass PubPeer moderation, here is a good opening sentence: "This is the most shocking case of clinical research fraud that my colleagues and I have uncovered to date".
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How long will it take Elsevier to alert their readers that there might be a problem with this article? Any guesses?
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In case you needed another reason to use @zotero : "the word processor plugin will also warn you if there [are] any existing citations in your document that have been retracted"
@zotero
Zotero
5 years
Zotero and @RetractionWatch have teamed up to automatically warn you about retracted items in your Zotero database.
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Readers shouldn't have to install a browser plugin to be alerted to discussion of an article. @biorxivpreprint links to PubPeer comments. Why don't any of the forward thinking journals? @mbeisen ? Until they do there's this:
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Doesn't a website like this already exist?
@researchremix
Heather Piwowar
4 years
It's time. Someone should build a website to name authors who won't share data. Linked to doi, authors auto emailed when claim made against one of their papers, space for author to post their rationale, easy way to mark 'resolved!' if data sent, easy way to search. #opendata
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@RetractionWatch @rnl_s @rnl_s Rebecca - please supply examples of careers destroyed by uncivil anonymous comments on PubPeer. @RetractionWatch   #q4re2017
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PubPeer is 6 years old today.
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As part of PubPeer's written testimony to the Science Committee of the US House of Representatives, we wish to give examples of influential papers with unresolved integrity or quality issues. Please suggest your best cases. 1/2
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Our small team of volunteers has found 400 papers, based on similarities in titles, keywords and layout. These were relatively easy to find, although we did put in many hours of unpaid work to find these papers.
@MicrobiomDigest
Elisabeth Bik
5 years
@schneiderleonid @SmutClyde @JAByrneSci @PubPeer @mortenoxe @TigerBB8 Read my blog post with more details here: The Tadpole Paper Mill
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In the 6 years of PubPeer this comment from a few hours ago is one of the most poetic author defenses we've seen so far: "The world is so large under the electron microscope that if you want, you can find two identical ones."
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Post-publication peer review easily outperformed even the most careful reviewing in the best journal. http://t.co/hY5cfLcRpL @hannahdev
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PubPeer is a platform for factual, scientific discussion. If you believe that comments are abusive, unsupported or otherwise infringe on our guidelines we encourage you to report them. We examine all reports carefully.
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Universities and other scientific institutions can now receive immediate alerts when an article published by a member of their institution receives a comment on PubPeer:
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Editorial expression of concern @ScienceMagazine @MicrobiomDigest
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@OdedRechavi @SupremeHaggis Our experience from running an anonymous scientific publication commenting platform over the last 8 years is that worries of trolling are overblown and easily avoided with clear guidelines and moderation.
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Smart software spots statistical errors in psychology papers : Nature News & Comment via @NatureNews
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KU Leuven investigates claims against world authority on stem cell research
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Isn't the point of science to question everything? Do we really want "peer-reviewed" and journal name to signal any sort of quality? How about publish everything (including reviews) and trust nothing?
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What are you all still doing here?
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@mbeisen You're not alone. 8 years ago when we made the choice to allow anonymous comments we took a LOT of heat. With clear guidelines () and moderation it hasn't become the monster that was predicted and we now see many people softening their opinion on anonymity.
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All comments from PubMed Commons can now be consulted on PubPeer and they will remain on PubMed for anyone with the PubPeer browser plugin: Thanks to the @PubMedCommons team for sharing this valuable resource.
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Commenters using PubPeer's strong, user-controlled anonymity to discuss publications and data (factually and scientifically) will reduce their legal exposure.
@MicrobiomDigest
Elisabeth Bik
5 years
It seems that Jonathan Pruitt is trying to prevent people talking publicly about the unexpected duplications in his datasets. Luckily, the discussion continues on @PubPeer .
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Great news!
@RetractionWatch
Retraction Watch
3 years
We're delighted to report that @EndNoteNews users will now be notified of retractions of any publications in their library, thanks to the integration of our database.
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@MicrobiomDigest @Le___Doc Quite unjustified criticism, we should add.
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Thread: a short update on moderation on PubPeer. Any success of PubPeer is due entirely to the utility and accuracy of the comments submitted by our users. In order to maintain the highest quality of discussion, we continually refine our moderation policies.
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Reviewer finds rejected paper published in different journal w/ data relabelled (+ portions of his original review!)
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How did Springer Nature get into 3 **billion** euro debt? Is public research covering a shady business deal? "The entire proceeds would have been used to cut Springer Nature’s net debt by a third. That currently stands at roughly 3 billion euros."
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Discussion on the Chloroquine preliminary study on @medrxivpreprint and (possibly quicker) also on PubPeer
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Bad science misled millions with chronic fatigue syndrome. Here’s how we fought back via @statnews
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Wishing a Happy New Year to all PubPeer and Peeriodicals contributors! Our sites would quite simply not exist without you. Their utility flows entirely from your expertise and hard - sometimes thankless - work. Thank you all.
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A reminder that legal threats are not a theoretical risk when you question the work of others. That's one of the reasons we allow anonymity on PubPeer (while moderating comments). A lot of the historical debate on the issue summarised here:
@FredrikJutfelt
Fredrik Jutfelt 🐠
4 years
Yet another #pruittdata paper. I wish someone would put the google spreadsheet with the Pruitt paper overview back up.
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Retweeting this one but the entire thread is worth a read .
@JACoates
Jonny Coates (jacoates.bsky.social)
2 years
Peer review does not stop bad science being published. Peer review does not validate a papers findings. Peer review does not significantly improve (most) studies that have been preprinted. Peer review does cost considerable time and money.
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Frustrating exchange in this thread, between the Chief Editor of Nature Biomedical Engineering and readers of the journal.
@DaveFernig
Dave Fernig (migrating)
4 years
@PepPamies @BorisBarbour @Thatsregrettab1 @SpringerNature @PubPeer @NatureMaterials @nature It is indeed 0.0375 molecules and to maintain such crap in the scientific literature is on a par with STAP cells, arsenate DNA, Wakefield's MMR fraud; may not kill directly, but may indirectly, because some idiot will use this as 'evidence' for homeopathy and structure of H2O
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@ryneches @biorxivpreprint Are you aware that you can start your own journal in a few seconds and send these articles out for review? Even create an editorial board.
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He Was a Science Star. Then He Promoted a Questionable Cure for Covid-19.
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"Please compare Figure 9, of this article with the image in the CELL SIGNALLING CATALOGUE"!
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"..post-publication peer review easily outperformed even the most careful reviewing in the best journal": http://t.co/hY5cfLcRpL
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@PLOSONE @MicrobiomDigest Hi PLoS, if you appreciate these issues being brought to your attention you might consider subscribing to a dashboard so your responses can be more timely:
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Great course for all grad students at UW: . (Although key readings missing from week 10). @CT_Bergstrom
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Ironic that @naturenews has shutdown commenting on this piece for the last three days... @Richvn
@Nature
nature
8 years
You should feel free to scrutinise a paper following publication, but criticism should be constructive
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@MicrobiomDigest is a public service.
@MicrobiomDigest
Elisabeth Bik
4 years
I am currently posting all of those on @Pubpeer . Heck of a job, but at least they are now flagged for everyone who has PubPeer's browser extension. Some might be just errors, some might be intentional, but all are worth responding to. These journal editors chose to ignore.
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"You can buy an author’s position or an entire article."
@RetractionWatch
Retraction Watch
3 years
Introducing two sites that claim to sell authorships on scientific papers.
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@lakens We have all @PubMedCommons comments and will add them to PubPeer to preserve them as soon as we can. We are currently focused on putting the final touches on another exciting project that we hope to release over the next few months. Stay tuned.
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Putting aside personalities, reputations and ad hominems, @PubPeer we welcome focused and dispassionate scientific discussion. Authors are very welcome to respond with clarifications to questions about their work.
@raoult_didier
Didier Raoult
4 years
The witchhunter @MicrobiomDigest is not attentive to details when she judges that a study is useful to her paranoiac fights! Control group was treated with azithromycin. Nearly dying patients with lymphopenia were treated with hydroxychloroquine. Fraudulent study. Fake news.
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Finally, we remind another "frequent reporter" that PubPeer user pseuodyms are assigned randomly from the tree of life and are therefore not chosen by the commenter. Dicksonia Gigantea is a tree fern:
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We have updated our commenting guideline FAQs to reflect current moderation policies, which have evolved significantly since the site launched in 2012. We particularly draw your attention to the "content" and "quality" questions:
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Another reason why we allow anonymous critique on PubPeer.
@chrisdc77
Chris Chambers
6 years
What a shameful state of affairs it is when people DM me privately to say that entire sub-fields in their discipline are horrendously p-hacked but that they can't put their name to such statements publicly for fear of reprisals. Senior academics, hang your heads in shame.
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Another @CellCellPress paper making extraordinary claims for the microbiome on the basis of flawed statistics?
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"The False Claims Act allows whistleblowers to collect hefty rewards for reporting faked data in grant applications and reports."
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"The data hoarders have set up torrents from the 85 million articles and they’re looking for seeders."
@RetractionWatch
Retraction Watch
3 years
“Activist Archivists Are Trying to Save the ‘Pirate Bay of Science.’”
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Yet the final versions are costing millions... "Our analysis revealed that the text contents of the scientific papers generally changed very little from their pre-print to final published versions."
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Is there a microbiome bubble? cc @phylogenomics @edyong209
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Rather than simply moving from “paying to read” to “paying to publish”, it’s time for a European Open Access Platform
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This is getting a lot of traffic. From Facebook. Which is never a good sign.
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Apparently you can't publish the data provided in the antibody catalog...
@SciBlotter
Science Blotter
6 years
Cell Proliferation "Retracted: Role of 7-nicotinic acetylcholine rece..." @PubPeer
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People are asking why did @PubMedCommons fail. We might know why:
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"Pro tip to would-be fraudsters: If you’re going to submit new figures to support your claims, make sure they’re not obviously fake."
@RetractionWatch
Retraction Watch
4 years
Researchers tried to correct a figure after questions on @PubPeer . Then the real trouble started.
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Moderation will be much improved (and more transparent) in PubPeer v2. (beta version to be released soon)
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The Ibuprofen Debate Reveals the Danger of Covid-19 Rumors
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Evaluating Science's open-data policy "...mandate and enforce data archival[...]at the time of submission."
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We've been at this for over 7 years now but still come across comments that shock us:
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Wow. A lab head just cc'd us on a message he sent out to his entire department. http://t.co/vfnPWg6OGk
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Elsevier had started destroying SSRN:
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@lakens @PubMedCommons However, the closing of @PubMedCommons shows that these things take resources. We have received generous support from the @LauraArnoldFdn that will run out in May 2019. Please consider donating to keep PubPeer alive: @Neuro_Skeptic
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Anonymous comments are allowed.
@GenericBologna
rhymes with purple
4 years
In 5 words or less, start a fight without politics
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"Statistics are used much like a drunk uses a lamp post: for support, not illumination." -Vin Scully (and Andrew Lang)
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We could not agree more.
@VVoikar
Vootele Voikar
3 years
. @PubPeer should not be thought as for posting only criticism and concerns - positive comments are welcome as well, and perhaps the conclusions of journal club, concise summary of strengths/weaknesses
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Post your referee reports online says @lteytelman :
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@PetzoldKatja @MicrobiomDigest @AlinasNori @NakramR You might notice the PubPeer extensions working on #googlescholar as well. More improvements coming soon.
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"a very self-serving and disingenuous argument against robust data sharing" cc @NEJM @ivanoransky @Neuro_Skeptic
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